View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_high_74 (Length: 230)
Name: NF3482_high_74
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_high_74 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 53346441 - 53346219
Alignment:
| Q |
1 |
acattaatgccacgcaagtcctacatctacactaccaactggagtaatccatccaaataggtgattattggattttcctaccacgtta---tgttggaag |
97 |
Q |
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| T |
53346441 |
acattaatgccacgcaagtcctacatctacactaccaactggagtaaaccatccaaataggtgattattggattttcctaccacgttagtatgttggaag |
53346342 |
T |
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| Q |
98 |
attgaatgtctttcaaatcattctattgttatataatgatgttgctaactcgcacacacattctgctatgtagagctaaagatgttggcaacagttatct |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
53346341 |
attgaatgtctttcaaatcattctattgttatataatgatgttgctaactcgcacacacattctgctatgtagagctaaagat----------gttatct |
53346252 |
T |
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| Q |
198 |
tagaaaattaagcacatgaaaatattgacaacc |
230 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
53346251 |
tagaaaattaagcacatgaaaatattgacaacc |
53346219 |
T |
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