View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_high_79 (Length: 227)
Name: NF3482_high_79
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_high_79 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 5117310 - 5117529
Alignment:
| Q |
6 |
atgtactgtttttaagttttctcctttagctaataattatcatcaaatcataattt-aaacttattatgtttaaacacaggtgaaattccattgtccctc |
104 |
Q |
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| T |
5117310 |
atgtactgtttttaagttttctcctttagctaat---tatcatcaaatcataattttaaactttttatgtttaaacacaggtgaaattccattgtccctc |
5117406 |
T |
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| Q |
105 |
ttcaacatctcttctttgagagtgatcagccttcttagtaacaatttaaacggaactcttccacgatcgattggtaactgcacattgttacaaaggttat |
204 |
Q |
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| T |
5117407 |
ttcaacatctcttctttgagagtgatcagccttcgtagtaacaatttaaatggaactcttccacgatcgattggcaactgcacatttttacaaaagttat |
5117506 |
T |
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| Q |
205 |
atttcagtaataacttttttaca |
227 |
Q |
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| T |
5117507 |
atttcactaataacttttttaca |
5117529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 5099691 - 5099775
Alignment:
| Q |
75 |
ttaaacacaggtgaaattccattgtccctcttcaacatctcttctttgagagtgatcagccttcttagtaacaatttaaacggaa |
159 |
Q |
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| T |
5099691 |
ttaaatacaggtgaaattccattatccctcttcaacatctcttctttgagagagatcagccttactaagaacaatttaaatggaa |
5099775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 167
Target Start/End: Complemental strand, 5082553 - 5082467
Alignment:
| Q |
81 |
acaggtgaaattccattgtccctcttcaacatctcttctttgagagtgatcagccttcttagtaacaatttaaacggaactcttcca |
167 |
Q |
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| T |
5082553 |
acaggtgaaattcctgtatccctcttcagcatctcttctttgagagagatcagccttgatggtaacaatttaaatggaactcttcca |
5082467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 5082396 - 5082356
Alignment:
| Q |
163 |
ttccacgatcgattggtaactgcacattgttacaaaggtta |
203 |
Q |
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| T |
5082396 |
ttccacgatcgattggcaactgcacattgttacaaacgtta |
5082356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 14414533 - 14414448
Alignment:
| Q |
83 |
aggtgaaattccattgtccctcttcaacatctcttctttgagagtgatcagccttcttagtaacaatttaaacggaactcttccac |
168 |
Q |
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| T |
14414533 |
aggtgaaattccaatctccctcttcaacatctcttcgttgagagtgatcagccttttgggtaacaatttaaatggaattcttccac |
14414448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 14414378 - 14414314
Alignment:
| Q |
163 |
ttccacgatcgattggtaactgcacattgttacaaaggttatatttcagtaataacttttttaca |
227 |
Q |
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| T |
14414378 |
ttccacgatcaattggcaactgcacatcgttacaagagttatatttatataataacttttttaca |
14414314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 16877703 - 16877747
Alignment:
| Q |
82 |
caggtgaaattccattgtccctcttcaacatctcttctttgagag |
126 |
Q |
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| T |
16877703 |
caggtgaaattccattctccctcttcaatatcacttctttgagag |
16877747 |
T |
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