View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_13 (Length: 514)
Name: NF3482_low_13
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_13 |
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| [»] scaffold0094 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Original strand, 37051312 - 37051800
Alignment:
| Q |
18 |
cttatatttcaacaaacgtctcatttacttgtcttttatgaaacaataattcattcacataagaaatgagagaagcttatctatacaagcattgcaacta |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
37051312 |
cttatatttcaacaaacgactcatttacttgtcttttatgaaacaataattcattcacataagagatgagagaagcttatctatagaagcattgcaacta |
37051411 |
T |
|
| Q |
118 |
tttagatactatacactttgacaaaactcaaaagtaggtactagcaatataaaataaatgtaaaagaatatgaagtccacatataccaaaactccataaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37051412 |
tttagatactatacactttgacaaaactcaaaagtaggtactagcaatataaaataaaggtaaaagaatatgaagtccacatataccaaaactccataaa |
37051511 |
T |
|
| Q |
218 |
atgaaattaaagttacactcaagttgtttaaaaatttcaattaattcctatgaacacacgcatgaaaataagtgtaagtaaagtctaagtctaatttatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |
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| T |
37051512 |
atgaaattaaagttacactcaagttgtttaaaaatttcaattaattcctatgaacacatgcatgaaattaagtgtaagtaaagtctaagtctaatctatc |
37051611 |
T |
|
| Q |
318 |
taaaaggagcaagagggtttggggtacgtggagttttagatcttctaagctctttacaaacattatccaacattcccataaaatctctcacaataacaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37051612 |
taaaaggagcaagagggtttggggtacgtggagttttagaccttctaagctctttacaaacattatccaacattcccataaaatctctcacaataacaaa |
37051711 |
T |
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| Q |
418 |
tatcctaagtggattatcctccttactaacatctccatgaaaatattctgttatttctttaacacgtgctatcactctatcttcatctc |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37051712 |
tatcctaagtggattatcctccttactaacatctccatgaaaatattctgttatttctttaacacgtgctatcactctatcttcatctc |
37051800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 83 - 506
Target Start/End: Complemental strand, 7968 - 7554
Alignment:
| Q |
83 |
atgagagaagcttatctatacaagcattgcaactatttagatactatacactttgacaaaactcaaaagtaggtactagcaatataaaataaatgtaaaa |
182 |
Q |
| |
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||||| |||||||| |||||||||||||||| |||||| | |||| |||||||||||||| ||||||| ||||| |||||||||| |||||| |
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| T |
7968 |
atgagtgaagcttacctatacaagcattgca--tatttacacactacacactttgacaaaa-------gtaggtattagcaccataaaataaaggtaaaa |
7878 |
T |
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| Q |
183 |
gaatatgaagtccacatataccaaaactccataaaatgaaattaaagttacactcaagttgtttaaaaatttcaattaattcctatgaacacacgcatga |
282 |
Q |
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||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||| ||||| |
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| T |
7877 |
gaatatgaagtgtacatatacctaaagtccataaaatgaaattaaagttacactcaagttgtttgacaatttcaattaattcctctgaacacacacatga |
7778 |
T |
|
| Q |
283 |
aaataagtgtaagtaaagtctaagtctaatttatctaaaaggagcaagagggtttggggtacgtggagttttagatcttctaagctctttacaaacatta |
382 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7777 |
aattaagtgtaagtaaagtctaagtctaatttatctgaaaggagcaagagggtttggtgtacgtggagttttagaccttctaagctctttacaaacatta |
7678 |
T |
|
| Q |
383 |
tccaacattcccataaaatctctcacaataacaaatatcctaagtggattatcctccttactaacatctccatgaaaatattctgttatttctttaacac |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
7677 |
tccaacattcccataaaatctctcacaataacaaatatcctaagtggattatcctctttactgacatctccatgaaaatattcttttatttctttaacac |
7578 |
T |
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| Q |
483 |
gtgctatcactctatcttcatctc |
506 |
Q |
| |
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||| ||| |||||||||||||||| |
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| T |
7577 |
gtgttataactctatcttcatctc |
7554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 8061 - 8008
Alignment:
| Q |
18 |
cttatatttcaacaaacgtctcatttacttgtcttttatgaaacaataattcatt |
72 |
Q |
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||||||||||||||| | ||||||||||| |||||||||||||||||||||||| |
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| T |
8061 |
cttatatttcaacaat-gactcatttacttctcttttatgaaacaataattcatt |
8008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 72 - 506
Target Start/End: Original strand, 17217320 - 17217745
Alignment:
| Q |
72 |
tcacataagaaatgagagaagcttatctatacaagcattgcaactatttagatactatacactttgacaaaactcaaaagtaggtactagcaatataaaa |
171 |
Q |
| |
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||||||||| |||||||||||||| |||||||||||||||| |||||| | |||| |||||||||||||| || |||||||||| |||||| |
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| T |
17217320 |
tcacataagtgatgagagaagcttacctatacaagcattgca--tatttacacactacacactttgacaaaa-------gtgggtactagcaccataaaa |
17217410 |
T |
|
| Q |
172 |
taaatgtaaaagaatatgaagtccacatataccaaaactccataaaatgaaattaaagttacactcaagttgtttaaaaatttcaattaattcctatgaa |
271 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
17217411 |
taaagataaaagaatatgaagtccacatataccaaaagtccataaaatgaaattcaagttacactcaagtcgtttgaaaatttcaattaattcctatgaa |
17217510 |
T |
|
| Q |
272 |
cacacgcatgaaaataagtgtaagtaaagtctaagtctaatttatctaaaaggagcaagagggtttggggtacgtggagttttagatcttctaagctctt |
371 |
Q |
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||| ||||||| ||||||||||||||| ||||||||||| |||||||| |||||||||| |||||| ||||||||| ||||||| |||| |||||||| |
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| T |
17217511 |
cactaacatgaaattaagtgtaagtaaagactaagtctaatctatctaaatggagcaagagagtttggtgtacgtggaattttagaccttcaaagctctt |
17217610 |
T |
|
| Q |
372 |
tacaaacattatccaacattcccataaaatctctcacaataacaaatatcctaagtggattatcctccttactaacatctccatgaaaatattctgttat |
471 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
17217611 |
tacaaagattatctaacattcccataaaatctctcacaataacaaataccccaagtggattatcctctttactaacatctccatgaaaatattttgttat |
17217710 |
T |
|
| Q |
472 |
ttctttaacacgtgctatcactctatcttcatctc |
506 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||| |
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| T |
17217711 |
ttctttaacacgtgttataactctatcttcatctc |
17217745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 17217237 - 17217288
Alignment:
| Q |
18 |
cttatatttcaacaaacgtctcatttacttgtcttttatgaaacaataattca |
70 |
Q |
| |
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||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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|
| T |
17217237 |
cttatatttcaacaat-gactcatttacttgtcttttatgaaacaataattca |
17217288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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