View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3482_low_14 (Length: 513)

Name: NF3482_low_14
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3482_low_14
NF3482_low_14
[»] chr1 (3 HSPs)
chr1 (208-510)||(6314474-6314763)
chr1 (21-87)||(6297382-6297448)
chr1 (222-266)||(4695299-4695343)
[»] chr4 (1 HSPs)
chr4 (149-212)||(55982889-55982952)
[»] chr3 (2 HSPs)
chr3 (224-294)||(12366282-12366352)
chr3 (296-367)||(12346124-12346195)
[»] chr5 (1 HSPs)
chr5 (298-350)||(18904147-18904199)
[»] chr2 (2 HSPs)
chr2 (222-266)||(36680941-36680985)
chr2 (374-410)||(36682447-36682483)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 208 - 510
Target Start/End: Original strand, 6314474 - 6314763
Alignment:
Q  208 agctcaagttagtactagttattatgctcatatcattaatttctctatagagatgcaagtatgcgctccactcaccttagaaatgagggaaatgaggatc 307  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |         |||    
T  6314474 agctcaagttagtactagttattatgttcatatcattaatttctctatagagatgtaagtatgcgctccactcaccttagaaatgacg---------atc 6314564  T
Q  308 ttgtatattaaaaaacatatgactattaatctatgttatggtcctctctattacgagatggtatagttttaatttttagtatgtgcttgagacttttgtt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6314565 ttgtatattaaaaaacatatgactattaatctatgttatggtcctctctattacgagatggtatagttttaatttttagtatgtgcttgagacttttgtt 6314664  T
Q  408 tgcttgtttgatgtctctgcttaacaattcggttaagacaaatctcataattcataatatgcgaggctccttatttagaaatccaatatatagtatactt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  6314665 tgcttgtttgatgtctctgcttaacaattcggttaagacaaatttcata----ataatatgcgaggctccttatttagagatccaatatatagtatactt 6314760  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 6297448 - 6297382
Alignment:
Q  21 agtggacgagatattgaatgtgaggtgtgctttatgaatgcagtctgcaagaacttagccatcatta 87  Q
    |||| |||||||||||| |||| |||||||||||| || ||| ||||||||||||||||||||||||    
T  6297448 agtgtacgagatattgattgtgcggtgtgctttataaacgcaatctgcaagaacttagccatcatta 6297382  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 4695343 - 4695299
Alignment:
Q  222 ctagttattatgctcatatcattaatttctctatagagatgcaag 266  Q
    |||||||||||| |||| ||||||||| |||||||||||| ||||    
T  4695343 ctagttattatggtcatgtcattaattcctctatagagatacaag 4695299  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 55982952 - 55982889
Alignment:
Q  149 tgttagcctagtgtattgaagattaatctttcagcataaacctttccaccttggtcttgagctc 212  Q
    ||||||||||||||||||||||||||| |||||  ||||| ||| |||||||||||||| ||||    
T  55982952 tgttagcctagtgtattgaagattaatatttcaatataaatcttgccaccttggtcttgggctc 55982889  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 12366282 - 12366352
Alignment:
Q  224 agttattatgctcatatcattaatttctctatagagatgcaagtatgcgctccactcaccttagaaatgag 294  Q
    |||||||||| ||||||||| | |  |||||||||||||||||||||| || ||||| |||||||||||||    
T  12366282 agttattatgttcatatcataagtccctctatagagatgcaagtatgctctacactcgccttagaaatgag 12366352  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 367
Target Start/End: Original strand, 12346124 - 12346195
Alignment:
Q  296 gaaatgaggatcttgtatattaaaaaacatatgactattaatctatgttatggtcctctctattacgagatg 367  Q
    |||||||||||||||| ||| | ||||||| |||||| | ||| ||| ||||||||||||||||| ||||||    
T  12346124 gaaatgaggatcttgtgtatcagaaaacatctgactagtgatccatgctatggtcctctctattatgagatg 12346195  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 18904199 - 18904147
Alignment:
Q  298 aatgaggatcttgtatattaaaaaacatatgactattaatctatgttatggtc 350  Q
    |||||||||||||||| | || |||||| |||||||||||| ||||| |||||    
T  18904199 aatgaggatcttgtatgtcaataaacatttgactattaatccatgttgtggtc 18904147  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 36680941 - 36680985
Alignment:
Q  222 ctagttattatgctcatatcattaatttctctatagagatgcaag 266  Q
    |||||||||||| |||| || |||||| |||||||||||||||||    
T  36680941 ctagttattatgttcatgtctttaattcctctatagagatgcaag 36680985  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 410
Target Start/End: Original strand, 36682447 - 36682483
Alignment:
Q  374 ttttaatttttagtatgtgcttgagacttttgtttgc 410  Q
    |||||||| |||||||||||||||||||||| |||||    
T  36682447 ttttaattgttagtatgtgcttgagacttttatttgc 36682483  T

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