View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_16 (Length: 472)
Name: NF3482_low_16
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 6925679 - 6925216
Alignment:
| Q |
1 |
agaatatacaaacatgtcaaaattaattttatacattttaaatcaattttaattcctccaaacataca----ctaagtgagtaagacaaataagttaaac |
96 |
Q |
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| T |
6925679 |
agaatatacaaacatgtcaaaattaattttatacattttaaatcaattttaattcctccaaacatacatacactaagtgagtatgacaaataagttaaac |
6925580 |
T |
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| Q |
97 |
tttattgaataaaaataaattgaagttaatttctttgttgatcaattaattaccacatatgagataactccaattccatatcctgtgaaaaaccttccca |
196 |
Q |
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| T |
6925579 |
tttattgaataaaaataaattaaagttaatttctttgtttatcaattaattaccacataagagataactccaattccatatcctgtgaaaaaccttccca |
6925480 |
T |
|
| Q |
197 |
agtcaagtgtgtaagaactctgcattaaatgaaataatttaatga----annnnnnnnnngcaacatatttttagaagatgaacacattgttaaaatttc |
292 |
Q |
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| T |
6925479 |
agtcaagtgtgtaagaactctgcattagatgaaataatttaatgatttttatttttttttgcaacatatttttagaagatgaacacattgttaaaatttc |
6925380 |
T |
|
| Q |
293 |
aaaagatacataccttagagaagaagacagctagccatcctataatacaaaatcctgttgaaattctcatagcctgtttctcataaaattatgcaaaatg |
392 |
Q |
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| T |
6925379 |
aaaagatacataccttagagaagaagacagctagccatcctataatacaaaatcctgttgaaattctcatagcctgtttctcataaaattatgcaaaatg |
6925280 |
T |
|
| Q |
393 |
ttacatctaagaataaaattttaaatgtagagaatattaaagcatttaattttcacatgcatac |
456 |
Q |
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| T |
6925279 |
ttacatctaagaataaaattttaaatgtagagaatattaaagcatttaattttcacatgcatac |
6925216 |
T |
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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 49132325 - 49132243
Alignment:
| Q |
143 |
taattaccacatatgagataactccaattccatatcctgtgaaaaaccttcccaagtcaagtgtgtaagaactctgcattaaa |
225 |
Q |
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| T |
49132325 |
taattaccacatatgaaataactccaattccatatcctgtgaaaaatcttcctatatcaagtgagtaaggatcctgcattaaa |
49132243 |
T |
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