View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_18 (Length: 461)
Name: NF3482_low_18
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 2441438 - 2441884
Alignment:
| Q |
1 |
tgagtattctccgtataatattcatggagatcatcctaggttatgtgtagattgcttcgttggctcctgcaatggcatactttgttttactgctggtatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2441438 |
tgagtattctccgtataatattcatggagatcatcctaggttatgtgtagattgcttcgttggctcctgcaatggcatactttgttttactgctggtatt |
2441537 |
T |
|
| Q |
101 |
tataaaaagtctgtcatattatggaacccttccattagaaaaattaaggagtttcccctatttcaaaagccaaattggagtttcactcacatggcatttg |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2441538 |
tataaaatctctgtcatattatggaacccttccattagaaaaattaaggagtttcccctatttcaaaagccaaattggagtttcactcacatggcgtttg |
2441637 |
T |
|
| Q |
201 |
gctttggctatgattcttttaatgataattacaaagtggttgttgttttgcaaggtcttgtacaagatagtagtggtaacattgcgtgcaagacagaagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
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| T |
2441638 |
gctttggctatgattcttttaatgataattacaaagtggttgttgttttgcaaggtcttatacaagatagtagtggtaatattgcatgcaagacagaagt |
2441737 |
T |
|
| Q |
301 |
gaaggttcatacatctagtaccaattgttggaaaaacattcaggagtttacttttggtagtatccttcctgagcaatcaggtaaatttgtgagtgacaca |
400 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2441738 |
gaaggttcatacatctattaccaattgttggaaaaacattcaggagtttacttttggtagtatccttcctgagcaatcaggtaaatttgtgagtgacaca |
2441837 |
T |
|
| Q |
401 |
attaattggttggccgttattgattttgatgggggaagtccacgctt |
447 |
Q |
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| T |
2441838 |
attaattggttggccgttattgattttgatgggagaagtccacgctt |
2441884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 3754219 - 3754269
Alignment:
| Q |
197 |
tttggctttggctatgattcttttaatgataattacaaagtggttgttgtt |
247 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| |||||||||||| |
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| T |
3754219 |
tttggctttggctatgattctttaaacgataattacaaggtggttgttgtt |
3754269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 415
Target Start/End: Original strand, 13479305 - 13479421
Alignment:
| Q |
299 |
gtgaaggttcatacatctagtaccaattgttggaaaaacattcaggagtttacttttggtagtatccttcctgagcaatcaggtaaatttgtgagtgaca |
398 |
Q |
| |
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|||||||||||||||| ||||| ||| |||||||| ||||||||||||| | |||||| ||| | | |||| |||| || ||||||||||||| || |
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| T |
13479305 |
gtgaaggttcatacattgggtacccatttttggaaaaccattcaggagtttccctttggtgttatgcctgttgagaaatctggaaaatttgtgagtggca |
13479404 |
T |
|
| Q |
399 |
caattaattggttggcc |
415 |
Q |
| |
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||||||||||||||| |
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| T |
13479405 |
ggattaattggttggcc |
13479421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 4142569 - 4142519
Alignment:
| Q |
197 |
tttggctttggctatgattcttttaatgataattacaaagtggttgttgtt |
247 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||||||| |
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|
| T |
4142569 |
tttggctttggctatgattcttcaaaggataattacaaggtggttgttgtt |
4142519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 4158379 - 4158329
Alignment:
| Q |
197 |
tttggctttggctatgattcttttaatgataattacaaagtggttgttgtt |
247 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||||||| |
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|
| T |
4158379 |
tttggctttggctatgattcttcaaaggataattacaaggtggttgttgtt |
4158329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 12132708 - 12132754
Alignment:
| Q |
198 |
ttggctttggctatgattcttttaatgataattacaaagtggttgtt |
244 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||| ||||||||| |
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|
| T |
12132708 |
ttggctttggctatgattcttgtactgataattacaaggtggttgtt |
12132754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 7432483 - 7432431
Alignment:
| Q |
197 |
tttggctttggctatgattcttttaatgataattacaaagtggttgttgtttt |
249 |
Q |
| |
|
||||| |||||||||||||| |||| |||||||||||| ||| || ||||||| |
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|
| T |
7432483 |
tttggttttggctatgattcatttagtgataattacaaggtgattattgtttt |
7432431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 2067505 - 2067451
Alignment:
| Q |
197 |
tttggctttggctatgattcttttaatgataattacaaagtggttgttgttttgc |
251 |
Q |
| |
|
||||| ||||||||||||||||||| |||| |||||| |||||||||| ||||| |
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|
| T |
2067505 |
tttggttttggctatgattcttttagagatacttacaaggtggttgttggtttgc |
2067451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 1078615 - 1078566
Alignment:
| Q |
198 |
ttggctttggctatgattcttttaatgataattacaaagtggttgttgtt |
247 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||| |||||||||||| |
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|
| T |
1078615 |
ttggctttggctacgattcttttaccgagaattacaaggtggttgttgtt |
1078566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 20020201 - 20020148
Alignment:
| Q |
197 |
tttggctttggctatgattcttttaatgataattacaaagtggttgttgttttg |
250 |
Q |
| |
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|||||||||||||||||||||| | || |||||||| ||||||||||||||| |
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| T |
20020201 |
tttggctttggctatgattcttcaacggacaattacaaggtggttgttgttttg |
20020148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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