View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_19 (Length: 460)
Name: NF3482_low_19
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 26614391 - 26614824
Alignment:
| Q |
18 |
attggtgactggggaaggagaggtgaatacaatcaatccgaggttgctttacaggttcgattaannnnnnnn--cttcttatctttgatttaatttatat |
115 |
Q |
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| T |
26614391 |
attggtgactggggaaggagaggtaaatacaatcaatccgaggttgctttccaggttcgattaatttttttcttcttcttatctttgatttaatttatat |
26614490 |
T |
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| Q |
116 |
gtgtgtatcaaaattaaattgcgagtttcattcgagcatataaacaaagtaacaaaatataagcaaaaatgaaactacgtgtatctggtctaaaattttg |
215 |
Q |
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| T |
26614491 |
gtgtgtatcaaaattaaattgcgagtttcattcgagcatataaacaaagtaacaaaatataagcaaaaatgaaactacgtgtatctggtctaaacttttg |
26614590 |
T |
|
| Q |
216 |
atcagatacatgtacnnnnnnngcgtatattttatacaggggagtattaaataagttgttgtcgtataagctatttttataagttatgatcattcattca |
315 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26614591 |
atcagatacatgtactttttttgcgtatattttatacgggggagtattaaataagttgttgtcgtataagctatttttataagttatgatcattcattca |
26614690 |
T |
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| Q |
316 |
ttcataatcataagcactttttgtacaaaataaaaacttacaaaatgaaatttatttgattgcagatgggagtggttggagagaagcttgacattgattt |
415 |
Q |
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| T |
26614691 |
ttca-aatcataagcactttttgtacaaaataaaaacttacaaaatgaaatttatttgattgcagatgggagtggttggagagaagcttgacattgattt |
26614789 |
T |
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| Q |
416 |
tgtagtttcaactggtgacaatttctatgatgatg |
450 |
Q |
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| T |
26614790 |
tgtagtttcaactggtgacaatttctatgatgatg |
26614824 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 39897164 - 39897196
Alignment:
| Q |
195 |
tgtatctggtctaaaattttgatcagatacatg |
227 |
Q |
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| T |
39897164 |
tgtatctggtctaaaatattgatcagatacatg |
39897196 |
T |
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