View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_21 (Length: 442)
Name: NF3482_low_21
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 105 - 426
Target Start/End: Original strand, 31824862 - 31825173
Alignment:
| Q |
105 |
ctttccaaaattgaggaagtagaaaattttattaactaaagtactatcgatggacatttactaagctatcaccaaaacggatagctatcaccaaaactaa |
204 |
Q |
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| T |
31824862 |
ctttccaaaattgaggaagtagaaaattttattaactaaagtactatcgatggacatttactaagctatc-------------------accaaaactaa |
31824942 |
T |
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| Q |
205 |
agtactatcgatgaaaattttattaactaaagtaactaaattttatta---------actaaagtacttagtgtaaaacggatgcatgcatgaggggtcg |
295 |
Q |
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| T |
31824943 |
agtactatcgatgaaaattttattaactaaagtaactaaattttattaactgaattaactaaagtacttagtgtaaaacggatgcatgcatgaggggtcg |
31825042 |
T |
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| Q |
296 |
atctcgttatcaataagttaagttggtagatctaaaatgttttaaaataacaaaatgtttcataaatatgcctaagattggtcttgaaccaacactattt |
395 |
Q |
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| T |
31825043 |
atctcgttatcaataagttaagttggtagatctaaaatgttttaaaataacaaaatgtttcataaatatgcctaagattggtcttgaaccaacactattt |
31825142 |
T |
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| Q |
396 |
ttgcaaaaaggacaactttacacgaacctac |
426 |
Q |
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| T |
31825143 |
ttgcaaaaaggacaactttacacgaacctac |
31825173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 31824764 - 31824840
Alignment:
| Q |
5 |
agaagcaaaggtttgcccagcatgttggactcttggaccccgttgacaaggtttatatatttactctcataacataa |
81 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31824764 |
agaaacaaaggtttgcccaacatgttggactcttggaccccgttgacaaggtttatatatttactctcataacataa |
31824840 |
T |
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