View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_23 (Length: 412)
Name: NF3482_low_23
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_23 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 5 - 412
Target Start/End: Complemental strand, 41639263 - 41638856
Alignment:
| Q |
5 |
gaggagcagagacaaattacaactttcatttaacacaaacacattgtgatacagtaatcctgtagcagaaaggttatgcttttgaacaagaaaattagta |
104 |
Q |
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| T |
41639263 |
gaggagaagagacaaattacaactttcatttaacagaaacacattgtgatacagtaatcctgtagaagaaaggttatgcttttgaacaagaaaattagta |
41639164 |
T |
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| Q |
105 |
aaacatgacatgacaactctaggctgctagggaagaaaaaatcgaaatccttttaatattcttcgttgtatgtnnnnnnncaatgtgtactcccaaaaaa |
204 |
Q |
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| T |
41639163 |
aaacatgacatgacaactctaggctgctagggaagaaaaaatcgaaatccttttaatattcttcattgtatgtaaaaaaacaatgtgtactcccaaaaaa |
41639064 |
T |
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| Q |
205 |
ttcggtgaactaggcttgagaagtatgcgtcaagttaacgttgcgtatatgatgagagttaattggcgtttttgtacgcaactgaagcagatgtggacat |
304 |
Q |
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| T |
41639063 |
ttcggtgaactaggcttgagaagtatgcgtcaagttaacgttgcgtatatgatgagagctaattggcgtttttgtacgcaactgaagcagatgtggacat |
41638964 |
T |
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| Q |
305 |
cagttattcttaagaaatacaaatgtggttctagtttgcttccgatggtaaatgttgataaaccggggagcaatttttggcgcggcttgtgtgctaactg |
404 |
Q |
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| T |
41638963 |
cagttattcttaagaaatacaaatgtggttctagtttgcttccgatggtaaatgttgataaaccggggagcaatttttggcgcggcttgtgtgctaactg |
41638864 |
T |
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| Q |
405 |
gactaatt |
412 |
Q |
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| T |
41638863 |
gactaatt |
41638856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 188 - 412
Target Start/End: Original strand, 2718799 - 2719024
Alignment:
| Q |
188 |
tgtgtactcccaaaaaattcggtgaactaggcttgagaagtatgcgtcaagttaacgttgcgtatatgatgagagttaattggcgtttttgtacgcaact |
287 |
Q |
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| T |
2718799 |
tgtgtactccccaaaaattcggtggtttaggcttgagaagtatgtgtcaagttaacactgtgtatatgatgagagctaattggcgtttttgtactcgacc |
2718898 |
T |
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| Q |
288 |
gaagcagatgtggacatcagttattcttaagaaatacaaatgtggttctagtttgcttccgatggtaaatg-ttgataaaccggggagcaatttttggcg |
386 |
Q |
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| T |
2718899 |
aaagaagatgtggacatctgttattcgtaagaaatacaaatgtggttcttttttgcttccgatggtaaatgtttgataaaatggggagcaatttttggtg |
2718998 |
T |
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| Q |
387 |
cggcttgtgtgctaactggactaatt |
412 |
Q |
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| T |
2718999 |
tggcttgtgtgctacctggactaatt |
2719024 |
T |
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