View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_25 (Length: 410)
Name: NF3482_low_25
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 38723637 - 38723880
Alignment:
| Q |
1 |
ttatggaaaagagatataggaatgttagtggcaatgtgcaaggtcttgatcctaagctgaagaaagctgagagtaataaagttagattaacagttagtca |
100 |
Q |
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| T |
38723637 |
ttatggaaaagagatataggaatgttagtggcaatgtgcaaggtcttgatcctaagctgaagaaagctgagagtaataaagttagattaaaagttagtca |
38723736 |
T |
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| Q |
101 |
agatggttcagctcaatttaagagtattacagaagctcttaatagcattcaaccttataacattagaagagtgattatctccattgcaccgggttactat |
200 |
Q |
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| T |
38723737 |
agatggttcagctcaatttaagagtattacagaagctcttaatagcattcaaccttataacattagaagagtgattatctccattgcaccgggttactat |
38723836 |
T |
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| Q |
201 |
aggtacgaatatgctcactataactc-aaactgttttatttttt |
243 |
Q |
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| T |
38723837 |
aggtacgaatatgctgactataactcaaaactgttttatttttt |
38723880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 242 - 392
Target Start/End: Original strand, 38723914 - 38724064
Alignment:
| Q |
242 |
ttataacttgtgatgatcaattgatttcagggagaaaattgtagtcccaaaaacactccctttcataacattcctaggggacgtaagggatccaccaact |
341 |
Q |
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| T |
38723914 |
ttataacttgtgatgattaattgatttcagggagaaaattgtagtcccaaaaacactccctttcataacattcctaggggacgtaagggatccaccaact |
38724013 |
T |
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| Q |
342 |
ataactggaaatgatacacaatctgtcaccggaagcgatggggctcagttg |
392 |
Q |
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| T |
38724014 |
ataactggaaatgatacacaatctgtcaccggaagcgatggggctcagttg |
38724064 |
T |
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