View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_27 (Length: 396)
Name: NF3482_low_27
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 6860336 - 6859967
Alignment:
| Q |
14 |
gagatatccatttaaatcaatgtgnnnnnnnnncaaagattaatcaaattgacaatatcataagaaagcattaaaatacttacacatacgtttgctagaa |
113 |
Q |
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| T |
6860336 |
gagatatccatttaaatcaatgtgtttttttttcaaagattaatcaaattgacaatatcataagaaagcattaaaatacttacacatacgtttgctagaa |
6860237 |
T |
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| Q |
114 |
atcaagtgccggtatttcagatttcttctaaagagtaggagattgagaatgattattacggatattgctaaaatactagcaacagcagctattaaaatag |
213 |
Q |
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| T |
6860236 |
atcaagtgccggtatttcagctttcttctaaagagtaggagattgagaatgattattacggatattgctaaaatactagcagcagcagctattaaaatag |
6860137 |
T |
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| Q |
214 |
caacttttatgccnnnnnnnccttttccactctctgtattaataatcactataccaataaaataaaagttatatcagagaaactcaataaagggaataca |
313 |
Q |
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| T |
6860136 |
caacttttatgcctttttttccttttccactctctgtattaataatcactataccaataaaataaaagttatatcagagaaactcaataaagggaataca |
6860037 |
T |
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| Q |
314 |
ttatataaactaaatcttaatattaaaactttaagctagctatctgattcatcaacattaatgtaaaact |
383 |
Q |
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| T |
6860036 |
ttatataaactaaatcttaatattaaaaatttaagctagctatctgattcatcaacattaatgtaaaact |
6859967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 78 - 383
Target Start/End: Complemental strand, 27630364 - 27630061
Alignment:
| Q |
78 |
aaagcattaaaatacttacacatacgtttgctagaaatcaagtgccggtatttcagatttcttctaaagagtaggagattgagaatgattattacggata |
177 |
Q |
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| T |
27630364 |
aaagcattaaaatacttacacatacgcttcctggaaatcaagtgcttgtatttcgaatttcttctaaaaagtaggagc------atgattattgcagata |
27630271 |
T |
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| Q |
178 |
ttgctaaaatactagcaacagcagctattaaaatagcaacttttatgccnnnnnnnccttttccactctctgtattaataatcactataccaataaaata |
277 |
Q |
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||||||||| |||||||||||| ||| || |||||||||| ||||||| ||||| | |||||| |||||| |||||| ||||||||| |
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| T |
27630270 |
ttgctaaaacactagcaacagctcctaatataatagcaactattatgcctgtttttttctttccgtccactgtatgaataattactataacaataaaatg |
27630171 |
T |
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| Q |
278 |
aaagttatatcagagaaac-----tcaataaagggaatacattatataaactaaatcttaatattaaaactttaagctagctatctgattcatcaacatt |
372 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| || |||||||| |
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| T |
27630170 |
aaagttatatcagagaaacgaaactcaataaagggaatacattatataaactaaacattaatattaaaa-tttacactagctatctgactcctcaacatt |
27630072 |
T |
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| Q |
373 |
aatgtaaaact |
383 |
Q |
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|||| |||||| |
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| T |
27630071 |
aatggaaaact |
27630061 |
T |
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