View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3482_low_31 (Length: 358)

Name: NF3482_low_31
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3482_low_31
NF3482_low_31
[»] chr1 (13 HSPs)
chr1 (7-341)||(52517034-52517368)
chr1 (244-329)||(30882449-30882533)
chr1 (249-314)||(7347692-7347757)
chr1 (250-311)||(17473138-17473199)
chr1 (244-313)||(37143292-37143361)
chr1 (285-331)||(26238438-26238482)
chr1 (248-310)||(6025971-6026033)
chr1 (283-313)||(25634566-25634596)
chr1 (263-313)||(46331107-46331157)
chr1 (248-333)||(46937568-46937653)
chr1 (255-315)||(1880078-1880137)
chr1 (279-311)||(26161605-26161637)
chr1 (249-309)||(51203656-51203715)
[»] chr6 (12 HSPs)
chr6 (235-311)||(2732921-2732997)
chr6 (237-312)||(2457203-2457278)
chr6 (250-312)||(1912505-1912567)
chr6 (236-306)||(31322632-31322702)
chr6 (275-312)||(33735434-33735471)
chr6 (283-330)||(18270596-18270643)
chr6 (248-310)||(264553-264615)
chr6 (244-314)||(2458287-2458357)
chr6 (276-310)||(5730194-5730228)
chr6 (248-313)||(3736990-3737055)
chr6 (249-313)||(26494407-26494471)
chr6 (277-313)||(29961267-29961303)
[»] chr7 (11 HSPs)
chr7 (237-313)||(2219523-2219599)
chr7 (246-319)||(7245941-7246014)
chr7 (275-310)||(32888961-32888996)
chr7 (250-311)||(1110408-1110469)
chr7 (282-311)||(5260422-5260451)
chr7 (236-309)||(6894313-6894386)
chr7 (261-314)||(21451521-21451574)
chr7 (277-310)||(30885321-30885354)
chr7 (244-280)||(7982371-7982407)
chr7 (249-309)||(23747322-23747382)
chr7 (249-313)||(32231761-32231825)
[»] chr4 (17 HSPs)
chr4 (242-309)||(27722414-27722481)
chr4 (240-311)||(1202394-1202464)
chr4 (249-303)||(9318705-9318759)
chr4 (235-311)||(2562467-2562543)
chr4 (243-310)||(13298522-13298589)
chr4 (283-333)||(18968308-18968356)
chr4 (275-314)||(34581604-34581643)
chr4 (283-313)||(19237629-19237659)
chr4 (244-314)||(27121489-27121559)
chr4 (248-318)||(30617262-30617331)
chr4 (277-310)||(207498-207531)
chr4 (249-310)||(415144-415205)
chr4 (284-328)||(46891314-46891356)
chr4 (265-309)||(1045848-1045892)
chr4 (282-314)||(26275537-26275569)
chr4 (260-308)||(31675044-31675092)
chr4 (236-276)||(39064895-39064935)
[»] chr5 (10 HSPs)
chr5 (236-314)||(11257714-11257792)
chr5 (283-323)||(27725540-27725580)
chr5 (250-325)||(41014989-41015064)
chr5 (271-309)||(29466203-29466240)
chr5 (244-318)||(39258556-39258630)
chr5 (277-314)||(631488-631525)
chr5 (278-314)||(9446300-9446336)
chr5 (269-325)||(17755219-17755275)
chr5 (248-308)||(20981268-20981328)
chr5 (283-315)||(41399566-41399598)
[»] chr3 (10 HSPs)
chr3 (265-315)||(27016920-27016970)
chr3 (249-310)||(162902-162963)
chr3 (283-331)||(21754271-21754319)
chr3 (277-312)||(14794293-14794328)
chr3 (278-311)||(53855744-53855777)
chr3 (264-333)||(54842174-54842243)
chr3 (277-333)||(2990960-2991016)
chr3 (235-295)||(16169188-16169248)
chr3 (278-310)||(38884077-38884109)
chr3 (252-296)||(48198079-48198123)
[»] chr8 (14 HSPs)
chr8 (269-324)||(10987788-10987843)
chr8 (271-318)||(13869837-13869884)
chr8 (243-314)||(27483044-27483115)
chr8 (243-302)||(34297884-34297943)
chr8 (264-313)||(12361983-12362032)
chr8 (238-318)||(13851001-13851079)
chr8 (249-313)||(8282847-8282911)
chr8 (278-314)||(33120557-33120593)
chr8 (282-325)||(18899974-18900017)
chr8 (243-313)||(44806251-44806321)
chr8 (249-314)||(1310129-1310194)
chr8 (278-311)||(4050471-4050504)
chr8 (278-311)||(45371098-45371131)
chr8 (277-333)||(9112445-9112501)
[»] chr2 (7 HSPs)
chr2 (251-310)||(41631885-41631944)
chr2 (243-320)||(29378502-29378579)
chr2 (281-336)||(10030155-10030210)
chr2 (281-336)||(10052068-10052123)
chr2 (243-314)||(24011834-24011905)
chr2 (243-310)||(28044715-28044782)
chr2 (244-310)||(29415748-29415814)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 341
Target Start/End: Complemental strand, 52517368 - 52517034
Alignment:
Q  7 gtgagatgaagggagcaaattgtagttgcaattgtttggactgtctgaaataggatgtgaggttatgaaatcttaaaagttctatccatttccaccccat 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52517368 gtgaaatgaagggagcaaattgtagttgcaattgtttggactgtctgaaataggatgtgaggttatgaaatcttaaaagttctatccatttccaccccat 52517269  T
Q  107 atctatagtttttaacctgtcgggatattggggggtgaactattctaaatttctattgaagttaattaataaatatagcttacccctaccctactgttgt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52517268 atctatagtttttaacctgtcgggatattggggggtgaactattctaaatttctattgaagttaattaataaatatagcttacccctaccctactgttgt 52517169  T
Q  207 taattagtggctacatcggcactacaatactatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaa 306  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  52517168 taattagtggctacgtcggcactacaacactatagagtagtggaatttgaactaattgctattattttgtgatatgttatttagtacaaaatattgtcaa 52517069  T
Q  307 atagcggcaatatagcactattgcatatagtaatt 341  Q
    |||||||||||||||||||||||||||||||||||    
T  52517068 atagcggcaatatagcactattgcatatagtaatt 52517034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 30882449 - 30882533
Alignment:
Q  244 tagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatatagcactattg 329  Q
    ||||||||||||||| |||  ||||| ||||| ||||||||||| ||||||||||   |||||||||||||||||||||| |||||    
T  30882449 tagtggaatttgaacaaatcactattgttttgcgatatgctatt-agtacaaaatgacgtcaaatagcggcaatatagcattattg 30882533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 7347692 - 7347757
Alignment:
Q  249 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 314  Q
    |||||||||| |||||||||| |||||  |||  ||||||||||||||||||||| ||||||||||    
T  7347692 gaatttgaacaaattgctattgttttgcaatacactatttagtacaaaatattgtgaaatagcggc 7347757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 17473138 - 17473199
Alignment:
Q  250 aatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagc 311  Q
    ||||| ||| || ||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  17473138 aatttaaacaaaatgctattgttttgcaatatgctatttagtacaaaatattgtcaaatagc 17473199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 37143361 - 37143292
Alignment:
Q  244 tagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 313  Q
    ||||||| ||||||| |||| ||||||||  ||||||  |||||||||||||||||||| ||||||||||    
T  37143361 tagtggactttgaacaaattactattattgcgtgatacactatttagtacaaaatattgccaaatagcgg 37143292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 26238482 - 26238438
Alignment:
Q  285 atttagtacaaaatattgtcaaatagcggcaatatagcactattgca 331  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||    
T  26238482 atttagtacaaaatattgccaaatagcggc--tatagcactattgca 26238438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 6026033 - 6025971
Alignment:
Q  248 ggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 310  Q
    ||||||||||| ||| | |||| ||  | |||||||||||||||||||||| |||||||||||    
T  6026033 ggaatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgttgtcaaatag 6025971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Complemental strand, 25634596 - 25634566
Alignment:
Q  283 ctatttagtacaaaatattgtcaaatagcgg 313  Q
    |||||||||||||||||||||||||||||||    
T  25634596 ctatttagtacaaaatattgtcaaatagcgg 25634566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 46331157 - 46331107
Alignment:
Q  263 tgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 313  Q
    ||||||| |||| |||||||||||| ||||||||||  |||||||||||||    
T  46331157 tgctattgttttatgatatgctattaagtacaaaatggtgtcaaatagcgg 46331107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 333
Target Start/End: Original strand, 46937568 - 46937653
Alignment:
Q  248 ggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatatagcactattgcata 333  Q
    ||||||||||| || ||||||| ||  | |||  |||||||||||||||||||||| |||||| |||  |||| |||| |||||||    
T  46937568 ggaatttgaacaaagtgctattgttccgcgatgcgctatttagtacaaaatattgtgaaatagtggcgctataacactgttgcata 46937653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 1880137 - 1880078
Alignment:
Q  255 gaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggca 315  Q
    |||| |||||||||| || |||||||  ||||| |||||||||| ||||||||||||||||    
T  1880137 gaacaaattgctattgttatgtgatactctatt-agtacaaaatgttgtcaaatagcggca 1880078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 26161637 - 26161605
Alignment:
Q  279 tatgctatttagtacaaaatattgtcaaatagc 311  Q
    |||||||||||||||||| ||||||||||||||    
T  26161637 tatgctatttagtacaaagtattgtcaaatagc 26161605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 51203656 - 51203715
Alignment:
Q  249 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaata 309  Q
    ||||||||||||||||||| | ||||||  |||| ||||||| ||||| ||||||||||||    
T  51203656 gaatttgaactaattgctaatgttttgt-ctatgttatttagcacaaagtattgtcaaata 51203715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 2732921 - 2732997
Alignment:
Q  235 actatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagc 311  Q
    ||||||| |||||| ||||||||| ||| |||||| ||||| |||||||||||||||||||||| ||||||||||||    
T  2732921 actatagcgtagtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagc 2732997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 2457203 - 2457278
Alignment:
Q  237 tatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcg 312  Q
    ||||| |||||||||||||||  ||   ||||| |||||||||||||||||||||||||||| |||||||| ||||    
T  2457203 tatagtgtagtggaatttgaaaaaacgactattgttttgtgatatgctatttagtacaaaatgttgtcaaacagcg 2457278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 1912567 - 1912505
Alignment:
Q  250 aatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcg 312  Q
    ||||||||| ||| |||||| || || ||||| |||||||||||||| |||||||||||||||    
T  1912567 aatttgaacaaatcgctattgttctgcgatatactatttagtacaaattattgtcaaatagcg 1912505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 31322632 - 31322702
Alignment:
Q  236 ctatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaa 306  Q
    |||||| |||||||||||||||| ||||| ||||||| |||||||  ||||||  |||||||| |||||||    
T  31322632 ctatagcgtagtggaatttgaacaaattgttattattctgtgatacactatttcttacaaaatgttgtcaa 31322702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 33735471 - 33735434
Alignment:
Q  275 gtgatatgctatttagtacaaaatattgtcaaatagcg 312  Q
    |||||||||||||||||||||||| |||||||||||||    
T  33735471 gtgatatgctatttagtacaaaatgttgtcaaatagcg 33735434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 18270643 - 18270596
Alignment:
Q  283 ctatttagtacaaaatattgtcaaatagcggcaatatagcactattgc 330  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||| ||||    
T  18270643 ctatttaatacaaaatattgtgaaatagcggcactatagcactgttgc 18270596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 264553 - 264615
Alignment:
Q  248 ggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 310  Q
    ||||||||||| ||||| |||| || |||| || ||||||||||||||| | |||||||||||    
T  264553 ggaatttgaacaaattgttattgttctgtggtaggctatttagtacaaagtgttgtcaaatag 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 2458287 - 2458357
Alignment:
Q  244 tagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 314  Q
    |||||||| |||||| |||| ||||| |   ||||||||||||| |||| |||||||||||| ||||||||    
T  2458287 tagtggaaattgaacaaattactattgtcccgtgatatgctattcagtataaaatattgtcagatagcggc 2458357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 310
Target Start/End: Complemental strand, 5730228 - 5730194
Alignment:
Q  276 tgatatgctatttagtacaaaatattgtcaaatag 310  Q
    ||||||||||||||||||||||| |||||||||||    
T  5730228 tgatatgctatttagtacaaaatcttgtcaaatag 5730194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 3736990 - 3737055
Alignment:
Q  248 ggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 313  Q
    ||||||||||| ||||| |||| || || ||||||||||| |||||||| |||| ||| |||||||    
T  3736990 ggaatttgaacaaattgttattgttctgcgatatgctattcagtacaaactattatcatatagcgg 3737055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 26494407 - 26494471
Alignment:
Q  249 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 313  Q
    ||||||||||||||||||||| || ||  ||  ||||||||||||||| | ||||||||| ||||    
T  26494407 gaatttgaactaattgctattgttctgcaattcgctatttagtacaaactgttgtcaaattgcgg 26494471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 29961303 - 29961267
Alignment:
Q  277 gatatgctatttagtacaaaatattgtcaaatagcgg 313  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  29961303 gatatgctattcagtacaatatattgtcaaatagcgg 29961267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 2219599 - 2219523
Alignment:
Q  237 tatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 313  Q
    ||||| ||||| ||||||||||  || | |||| || | ||||||||||||||||||||||||||||||||||||||    
T  2219599 tatagtgtagtagaatttgaacatatcgttattgttctctgatatgctatttagtacaaaatattgtcaaatagcgg 2219523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 7246014 - 7245941
Alignment:
Q  246 gtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatat 319  Q
    ||||||||| ||| ||| |||||| ||||| |||| ||||||||||||||| | ||||||||||||||| ||||    
T  7246014 gtggaatttaaacaaatcgctattcttttgcgatacgctatttagtacaaagtgttgtcaaatagcggctatat 7245941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 310
Target Start/End: Original strand, 32888961 - 32888996
Alignment:
Q  275 gtgatatgctatttagtacaaaatattgtcaaatag 310  Q
    |||||||||||||||||||||| |||||||||||||    
T  32888961 gtgatatgctatttagtacaaagtattgtcaaatag 32888996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 1110469 - 1110408
Alignment:
Q  250 aatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagc 311  Q
    ||||||||| |||||||||| ||| | ||||||||||||||| | || | ||||||||||||    
T  1110469 aatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgtcaaatagc 1110408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 311
Target Start/End: Original strand, 5260422 - 5260451
Alignment:
Q  282 gctatttagtacaaaatattgtcaaatagc 311  Q
    ||||||||||||||||||||||||||||||    
T  5260422 gctatttagtacaaaatattgtcaaatagc 5260451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 6894386 - 6894313
Alignment:
Q  236 ctatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaata 309  Q
    |||||| |||||||||||||||| |||||||||| |||    |||  ||||| |||||||||| ||||||||||    
T  6894386 ctatagcgtagtggaatttgaacaaattgctattgtttaacaatacactattaagtacaaaatgttgtcaaata 6894313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 21451574 - 21451521
Alignment:
Q  261 attgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 314  Q
    ||||||||| || || |||| || |||||||||||||| |||||||||||||||    
T  21451574 attgctattgttctgcgatacgcaatttagtacaaaatcttgtcaaatagcggc 21451521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 30885354 - 30885321
Alignment:
Q  277 gatatgctatttagtacaaaatattgtcaaatag 310  Q
    ||||||||||||||||||||| ||||||||||||    
T  30885354 gatatgctatttagtacaaaacattgtcaaatag 30885321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 7982407 - 7982371
Alignment:
Q  244 tagtggaatttgaactaattgctattattttgtgata 280  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  7982407 tagtggaatttgaacaaattgctattgttttgtgata 7982371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 23747322 - 23747382
Alignment:
Q  249 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaata 309  Q
    |||||||||| ||| |||||| || |||||||||||| |||||||||| | ||||| ||||    
T  23747322 gaatttgaacaaatagctattgttctgtgatatgctagttagtacaaactgttgtcgaata 23747382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 32231761 - 32231825
Alignment:
Q  249 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 313  Q
    |||||||||| |||  ||| | || ||||||||| ||||||| |||||||||||| |||||||||    
T  32231761 gaatttgaacaaatctctagtgttctgtgatatgttatttagcacaaaatattgtgaaatagcgg 32231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 27722481 - 27722414
Alignment:
Q  242 agtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaata 309  Q
    |||||| ||||||||||||||||||||| ||    ||||||||||| |||||||||||||||||||||    
T  27722481 agtagtagaatttgaactaattgctattgttccacgatatgctattaagtacaaaatattgtcaaata 27722414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 1202464 - 1202394
Alignment:
Q  240 agagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagc 311  Q
    |||||||||||| |||||  |||| | || |||||| |||||||||||||||| ||||||||||||||||||    
T  1202464 agagtagtggaaattgaagaaattaccat-attttgcgatatgctatttagtataaaatattgtcaaatagc 1202394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 303
Target Start/End: Original strand, 9318705 - 9318759
Alignment:
Q  249 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgt 303  Q
    |||||||||| ||||  |||| ||| |||||||||||||||||||||||||||||    
T  9318705 gaatttgaacaaattcatattgtttagtgatatgctatttagtacaaaatattgt 9318759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 2562467 - 2562543
Alignment:
Q  235 actatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagc 311  Q
    ||||||| | || ||||||||||| ||| ||||| ||||  ||||| ||| |||||||||||| |||||||||||||    
T  2562467 actatagtgcagcggaatttgaacaaatcgctataatttcctgatacgctgtttagtacaaaacattgtcaaatagc 2562543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 13298522 - 13298589
Alignment:
Q  243 gtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 310  Q
    |||| ||||||||||| |||  ||||| || ||||||||||||||||||||||| |  ||||||||||    
T  13298522 gtagcggaatttgaacaaatcactattgttctgtgatatgctatttagtacaaagtgctgtcaaatag 13298589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 18968308 - 18968356
Alignment:
Q  283 ctatttagtacaaaatattgtcaaatagcggcaatatagcactattgcata 333  Q
    |||||||||||||||| |||||||||||||||  |||| ||||||||||||    
T  18968308 ctatttagtacaaaatgttgtcaaatagcggc--tataacactattgcata 18968356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 314
Target Start/End: Original strand, 34581604 - 34581643
Alignment:
Q  275 gtgatatgctatttagtacaaaatattgtcaaatagcggc 314  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  34581604 gtgatacgctatttagtacaaaatgttgtcaaatagcggc 34581643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Complemental strand, 19237659 - 19237629
Alignment:
Q  283 ctatttagtacaaaatattgtcaaatagcgg 313  Q
    |||||||||||||||||||||||||||||||    
T  19237659 ctatttagtacaaaatattgtcaaatagcgg 19237629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 27121489 - 27121559
Alignment:
Q  244 tagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 314  Q
    |||||||| |||||| |||| ||||| |   ||||||||||||| |||| |||||||||||| ||||||||    
T  27121489 tagtggaaattgaacaaattactattgtcccgtgatatgctattcagtataaaatattgtcagatagcggc 27121559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 30617331 - 30617262
Alignment:
Q  248 ggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaata 318  Q
    ||||||||||| ||| |||| | || ||||||| |||||| ||||||||||||||| |||||| |||||||    
T  30617331 ggaatttgaacaaatcgctagtgttctgtgatacgctatt-agtacaaaatattgtgaaatagtggcaata 30617262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 207498 - 207531
Alignment:
Q  277 gatatgctatttagtacaaaatattgtcaaatag 310  Q
    |||||||||||||||||||| |||||||||||||    
T  207498 gatatgctatttagtacaaagtattgtcaaatag 207531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 415144 - 415205
Alignment:
Q  249 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 310  Q
    |||||||||| | | |||||| ||| ||||| |||||||||||||||||| |||| ||||||    
T  415144 gaatttgaacaagtcgctattgtttcgtgatttgctatttagtacaaaatgttgtgaaatag 415205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 46891356 - 46891314
Alignment:
Q  284 tatttagtacaaaatattgtcaaatagcggcaatatagcactatt 328  Q
    |||||||||||||||||||| ||||||||||  ||||||||||||    
T  46891356 tatttagtacaaaatattgtgaaatagcggc--tatagcactatt 46891314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 1045848 - 1045892
Alignment:
Q  265 ctattattttgtgatatgctatttagtacaaaatattgtcaaata 309  Q
    ||||| |||||||||| || ||||| |||||||||||||||||||    
T  1045848 ctattgttttgtgatacgcgatttaatacaaaatattgtcaaata 1045892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 26275569 - 26275537
Alignment:
Q  282 gctatttagtacaaaatattgtcaaatagcggc 314  Q
    |||||||||||||||||||||| ||||||||||    
T  26275569 gctatttagtacaaaatattgtgaaatagcggc 26275537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 31675092 - 31675044
Alignment:
Q  260 aattgctattattttgtgatatgctatttagtacaaaatattgtcaaat 308  Q
    |||||||||| | |||||||| | ||||||||||||||| |||||||||    
T  31675092 aattgctattgtcttgtgatacgttatttagtacaaaatgttgtcaaat 31675044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 39064935 - 39064895
Alignment:
Q  236 ctatagagtagtggaatttgaactaattgctattattttgt 276  Q
    |||||| |||||||||||||||| |||||||||| ||||||    
T  39064935 ctatagcgtagtggaatttgaacaaattgctattgttttgt 39064895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 11257714 - 11257792
Alignment:
Q  236 ctatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 314  Q
    |||||| |||| ||||| ||||| ||| |||||| || |  |||||||||||||||||||||| |||||||||||||||    
T  11257714 ctatagtgtagcggaatatgaacaaatcgctattgttatacgatatgctatttagtacaaaatgttgtcaaatagcggc 11257792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 27725540 - 27725580
Alignment:
Q  283 ctatttagtacaaaatattgtcaaatagcggcaatatagca 323  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  27725540 ctatttagtacaaaatattgtcaaatagcggcactatagca 27725580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 325
Target Start/End: Complemental strand, 41015064 - 41014989
Alignment:
Q  250 aatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatatagcact 325  Q
    ||||||||| || ||||||| ||  |||||||||||||||||||||| | |||||| ||||| || ||||||||||    
T  41015064 aatttgaacaaactgctattgttccgtgatatgctatttagtacaaagtgttgtcatatagctgcgatatagcact 41014989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 309
Target Start/End: Original strand, 29466203 - 29466240
Alignment:
Q  271 ttttgtgatatgctatttagtacaaaatattgtcaaata 309  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  29466203 ttttgtgatatgctatttagtacaaaata-tgtcaaata 29466240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 39258630 - 39258556
Alignment:
Q  244 tagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaata 318  Q
    ||||||||||||||| ||||| |||| || || ||||  ||||||||||||||   |||||||||| ||||||||    
T  39258630 tagtggaatttgaaccaattgttattgttctgcgatacactatttagtacaaaggtttgtcaaataacggcaata 39258556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 631525 - 631488
Alignment:
Q  277 gatatgctatttagtacaaaatattgtcaaatagcggc 314  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  631525 gatacgctatttagtacaaaatattgtcatatagcggc 631488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 9446300 - 9446336
Alignment:
Q  278 atatgctatttagtacaaaatattgtcaaatagcggc 314  Q
    |||||||||||||||||||||||| | ||||||||||    
T  9446300 atatgctatttagtacaaaatattatgaaatagcggc 9446336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 17755275 - 17755219
Alignment:
Q  269 tattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatatagcact 325  Q
    |||| ||| ||| ||||||||||||||| | ||||||||||| |||| |||||||||    
T  17755275 tattatgtaatacgctatttagtacaaagtgttgtcaaatagaggcactatagcact 17755219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 20981268 - 20981328
Alignment:
Q  248 ggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaat 308  Q
    |||||||||||||||  ||||| || ||  ||| ||||||||||| |||||||||||||||    
T  20981268 ggaatttgaactaatcactattgttctgcaatacgctatttagtataaaatattgtcaaat 20981328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 41399598 - 41399566
Alignment:
Q  283 ctatttagtacaaaatattgtcaaatagcggca 315  Q
    |||||||||||||||| ||||||||||||||||    
T  41399598 ctatttagtacaaaatgttgtcaaatagcggca 41399566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 27016970 - 27016920
Alignment:
Q  265 ctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggca 315  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  27016970 ctattattttgtgatatactatttagtacaaaatgttgtcaaattgcggca 27016920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 162902 - 162963
Alignment:
Q  249 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 310  Q
    |||||||||| ||||| ||||||| || |||  |||||||||||||||||||||| ||||||    
T  162902 gaatttgaacaaattgttattattctgcgatgcgctatttagtacaaaatattgtgaaatag 162963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 21754271 - 21754319
Alignment:
Q  283 ctatttagtacaaaatattgtcaaatagcggcaatatagcactattgca 331  Q
    |||||||||||||| | |||||||||||||||  |||||||||||||||    
T  21754271 ctatttagtacaaattgttgtcaaatagcggcgctatagcactattgca 21754319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 14794328 - 14794293
Alignment:
Q  277 gatatgctatttagtacaaaatattgtcaaatagcg 312  Q
    |||| |||||||||||||||||||||||||||||||    
T  14794328 gatacgctatttagtacaaaatattgtcaaatagcg 14794293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 53855777 - 53855744
Alignment:
Q  278 atatgctatttagtacaaaatattgtcaaatagc 311  Q
    ||||||||||||||||||||| ||||||||||||    
T  53855777 atatgctatttagtacaaaatgttgtcaaatagc 53855744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 54842243 - 54842174
Alignment:
Q  264 gctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatatagcactattgcata 333  Q
    |||||| || ||||||| ||||||||||| ||||| |||||||||||| |   |||||| ||||||||||    
T  54842243 gctattgttctgtgatacgctatttagtataaaatgttgtcaaatagctgtgctatagccctattgcata 54842174  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 2991016 - 2990960
Alignment:
Q  277 gatatgctatttagtacaaaatattgtcaaatagcggcaatatagcactattgcata 333  Q
    |||| ||||||||||||||||| ||||||||||| |||  |||| |||| |||||||    
T  2991016 gatacgctatttagtacaaaatgttgtcaaatagtggccctatatcactgttgcata 2990960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 16169248 - 16169188
Alignment:
Q  235 actatagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaa 295  Q
    ||||||||||||  | |||||||||||| |||||| || || ||||||||||| |||||||    
T  16169248 actatagagtagcagtatttgaactaatcgctattgttctgcgatatgctattgagtacaa 16169188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 38884109 - 38884077
Alignment:
Q  278 atatgctatttagtacaaaatattgtcaaatag 310  Q
    ||||||||||| |||||||||||||||||||||    
T  38884109 atatgctatttggtacaaaatattgtcaaatag 38884077  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 48198123 - 48198079
Alignment:
Q  252 tttgaactaattgctattattttgtgatatgctatttagtacaaa 296  Q
    ||||||||||| |||||| || ||||||||| |||||||||||||    
T  48198123 tttgaactaatcgctattgttctgtgatatgttatttagtacaaa 48198079  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 10987788 - 10987843
Alignment:
Q  269 tattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatatagcac 324  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||| ||| ||||    
T  10987788 tattctgtgatatgctatttagtacaaagttttgtcaaatagcggcactattgcac 10987843  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 13869884 - 13869837
Alignment:
Q  271 ttttgtgatatgctatttagtacaaaatattgtcaaatagcggcaata 318  Q
    |||||||||||||||||||||||||||| |||||||| || |||||||    
T  13869884 ttttgtgatatgctatttagtacaaaatgttgtcaaacagtggcaata 13869837  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 27483044 - 27483115
Alignment:
Q  243 gtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 314  Q
    |||| ||||||||||| ||  ||||||||| || |||| |||||  ||||||||||||||||||||||||||    
T  27483044 gtagaggaatttgaacaaaccgctattattctgagatacgctatccagtacaaaatattgtcaaatagcggc 27483115  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 34297943 - 34297884
Alignment:
Q  243 gtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattg 302  Q
    |||| ||||||||||  |||||||||| |||||| ||| |||||||||||||||||||||    
T  34297943 gtagaggaatttgaatgaattgctattgttttgtaatacgctatttagtacaaaatattg 34297884  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 12361983 - 12362032
Alignment:
Q  264 gctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 313  Q
    ||||||||| |||||||  ||||||||||||||||||||| |||||||||    
T  12361983 gctattattgtgtgatacactatttagtacaaaatattgtgaaatagcgg 12362032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 13851079 - 13851001
Alignment:
Q  238 atagagtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaata 318  Q
    |||| |||| ||||||||| | | ||||||||  |||||||||| |||||||||||||||| || |||||||| |||||||    
T  13851079 atagcgtagaggaatttgagcaagttgctatt--tttgtgatatactatttagtacaaaatgttatcaaatagtggcaata 13851001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 8282911 - 8282847
Alignment:
Q  249 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 313  Q
    |||||||||| ||| |||||| | ||||||||||| ||||| |||||||| || |||||||||||    
T  8282911 gaatttgaacaaatagctattgtcttgtgatatgcgatttattacaaaatgttctcaaatagcgg 8282847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 33120593 - 33120557
Alignment:
Q  278 atatgctatttagtacaaaatattgtcaaatagcggc 314  Q
    ||||||||||||||||||||| |||||||||||||||    
T  33120593 atatgctatttagtacaaaatgttgtcaaatagcggc 33120557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 18900017 - 18899974
Alignment:
Q  282 gctatttagtacaaaatattgtcaaatagcggcaatatagcact 325  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||    
T  18900017 gctatttattacaaaatgttgtcaaatagaggcaatatagcact 18899974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 44806251 - 44806321
Alignment:
Q  243 gtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcgg 313  Q
    ||||| |||||||||| || ||||| |||||   |||| ||||||||||||||| | ||||||||||||||    
T  44806251 gtagtagaatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagcgg 44806321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 1310129 - 1310194
Alignment:
Q  249 gaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 314  Q
    |||||||||| |||||||||| ||   |||||  ||||||||||||| ||||||| ||||||||||    
T  1310129 gaatttgaacaaattgctattgttccttgatacactatttagtacaatatattgtgaaatagcggc 1310194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 4050471 - 4050504
Alignment:
Q  278 atatgctatttagtacaaaatattgtcaaatagc 311  Q
    |||||||||||||| |||||||||||||||||||    
T  4050471 atatgctatttagtccaaaatattgtcaaatagc 4050504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 45371131 - 45371098
Alignment:
Q  278 atatgctatttagtacaaaatattgtcaaatagc 311  Q
    ||||||||||||||||||||| ||||||||||||    
T  45371131 atatgctatttagtacaaaatgttgtcaaatagc 45371098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 9112445 - 9112501
Alignment:
Q  277 gatatgctatttagtacaaaatattgtcaaatagcggcaatatagcactattgcata 333  Q
    |||||||||||||||||| |||||||| |||||| |||  || |||| |||||||||    
T  9112445 gatatgctatttagtacagaatattgtgaaatagtggcgctacagcaatattgcata 9112501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 310
Target Start/End: Complemental strand, 41631944 - 41631885
Alignment:
Q  251 atttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 310  Q
    |||||||| |||||||||| ||||||||||||||||||||||| || | ||||| |||||    
T  41631944 atttgaacaaattgctattgttttgtgatatgctatttagtacgaagtgttgtcgaatag 41631885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 29378502 - 29378579
Alignment:
Q  243 gtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggcaatata 320  Q
    |||| ||||||||||| ||||| |||| || || |||| ||||||| ||||||| ||||||| ||||||||| |||||    
T  29378502 gtagcggaatttgaacaaattgatattgttctgcgatacgctattttgtacaaagtattgtctaatagcggctatata 29378579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 10030210 - 10030155
Alignment:
Q  281 tgctatttagtacaaaatattgtcaaatagcggcaatatagcactattgcatatag 336  Q
    ||||||||||||  |||| || ||||||||||||  ||||||||||||||||||||    
T  10030210 tgctatttagtattaaatgttttcaaatagcggcgctatagcactattgcatatag 10030155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 10052123 - 10052068
Alignment:
Q  281 tgctatttagtacaaaatattgtcaaatagcggcaatatagcactattgcatatag 336  Q
    ||||||||||||  |||| || ||||||||||||  ||||||||||||||||||||    
T  10052123 tgctatttagtattaaatgttttcaaatagcggcgctatagcactattgcatatag 10052068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 24011905 - 24011834
Alignment:
Q  243 gtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatagcggc 314  Q
    |||| ||||||||||| || ||| ||| |||||| ||| ||||||| ||| |||||||||| ||||||||||    
T  24011905 gtagcggaatttgaacaaactgcaattgttttgtaataagctattttgtataaaatattgtgaaatagcggc 24011834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 28044782 - 28044715
Alignment:
Q  243 gtagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 310  Q
    |||| ||||||||||  || | ||||| ||||||||||||| |||||||||||| | |||||||||||    
T  28044782 gtagcggaatttgaataaactactattgttttgtgatatgcgatttagtacaaagtgttgtcaaatag 28044715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 29415814 - 29415748
Alignment:
Q  244 tagtggaatttgaactaattgctattattttgtgatatgctatttagtacaaaatattgtcaaatag 310  Q
    ||||||| ||| ||| |||||||||| || ||||||||||  || |||||||||| |||||||||||    
T  29415814 tagtggagtttaaacaaattgctattgttctgtgatatgccgttcagtacaaaatgttgtcaaatag 29415748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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