View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_32 (Length: 348)
Name: NF3482_low_32
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_32 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 28902192 - 28902521
Alignment:
| Q |
19 |
tttgcatcacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28902192 |
tttgcatcacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacg |
28902291 |
T |
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| Q |
119 |
cttcagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttcgtatgtttcaccactttcccttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28902292 |
cttcagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttcgtatgtttcactactttcccttt |
28902391 |
T |
|
| Q |
219 |
tattattgacttcagcttttcactgcacttctttctcctcaccgatttaactcttgaagtgccaaccaagtcatcacactcagaacccataaagtcaccc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| | |
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| T |
28902392 |
tattattgacttcagcttttcactgcacttctttctcctcaccgatttaactcttgacgtgccaaccaagtcatcacaatcagaacctataaagtcactc |
28902491 |
T |
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| Q |
319 |
gcatcagagtcaccagtatcgtcttccccc |
348 |
Q |
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|||||||| ||||||||||||||||||||| |
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| T |
28902492 |
gcatcagattcaccagtatcgtcttccccc |
28902521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 28925832 - 28926156
Alignment:
| Q |
18 |
atttgcatcacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaac |
117 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||| | |||||||||| | ||| |||| ||||||| |||| ||| || || |
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| T |
28925832 |
atttgcatcacagatta---tcttctttttcttggggtcaaaaagctggtgtttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaa |
28925928 |
T |
|
| Q |
118 |
gcttcagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttcgtatgtttcaccactttccctt |
217 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| | |||||||||| |
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| T |
28925929 |
gctttggtcgtgtctctaccaatatttttaagaaaatctatgagacttcttgaaccccatcctacaaaatcctttttcttatctttcgctactttccctt |
28926028 |
T |
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| Q |
218 |
ttattattgacttcagcttttcactgcacttctttctcctcaccgatttaactcttgaagtgccaaccaagtcatcacactcagaacccataaagtcacc |
317 |
Q |
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||||| || || ||||||| | |||||||||||| |||| |||||||||||||| || || | ||||| ||||| ||||| || ||||||| | |
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| T |
28926029 |
ttatt---gatttgagctttttcgtacacttctttctcttcactgatttaactcttgacgtttcatcgaagtcgtcacaatcagatcctataaagttgct |
28926125 |
T |
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| Q |
318 |
cgcatcagagtcaccagtatcgtcttccccc |
348 |
Q |
| |
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| ||||||| ||||||||||| ||||||||| |
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| T |
28926126 |
cacatcagaatcaccagtatcatcttccccc |
28926156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 28916603 - 28916914
Alignment:
| Q |
18 |
atttgcatcacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaac |
117 |
Q |
| |
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||||||||| || ||||| ||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||||||||||| ||| || || |
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| T |
28916603 |
atttgcatcgcagattaccatcttctttttcttggggtcaaaaagctggtttttttggcagtacttatggatgatcgaagcaacatcaatttcggaaaaa |
28916702 |
T |
|
| Q |
118 |
gcttcagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttcgtatgtttcaccactttccctt |
217 |
Q |
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|||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| | |
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| T |
28916703 |
gctttggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttcttatcttttgttactttcccat |
28916802 |
T |
|
| Q |
218 |
ttattattgacttcagcttttcactgcacttctttctcctcaccgatttaactcttgaagtgccaaccaagtcatcacactcagaacccataaagtcacc |
317 |
Q |
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||||||| || | ||| | |||||||||| | || | |||||||||||| |||||||||||||| ||| | |||||||| |||||||||| |
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| T |
28916803 |
---ttattgatttaaccttat------tcttctttctctttactggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcact |
28916893 |
T |
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| Q |
318 |
cgcatcagagtcaccagtatc |
338 |
Q |
| |
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|||||||| ||||| ||||| |
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| T |
28916894 |
tgcatcagattcaccggtatc |
28916914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 28892237 - 28892414
Alignment:
| Q |
18 |
atttgcatcacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaac |
117 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||| ||| || || |
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| T |
28892237 |
atttgcatcacagattaccttcttctttttcttggggtcaaaaagctggtttttgtggcagtacttactgatgattgaagcaacatcaatttcggaaaaa |
28892336 |
T |
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| Q |
118 |
gcttcagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatcctttttc |
195 |
Q |
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|||| ||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
28892337 |
gctttggtcgtgtcttcaccaatatttttaagaaaatctacgagacttcttgaaccccatccaacaaaatcttttttc |
28892414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 28935501 - 28935601
Alignment:
| Q |
85 |
atgatgatccaagcaacatcaagttcagacaacgcttcagtcgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaa |
184 |
Q |
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||||| ||| ||||||||||| |||| | || |||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28935501 |
atgattatcgaagcaacatcatgttccgtaaatgcttttgccgtgtctctaccaatatctttaagaaaatctatgagacttcttgaaccccatccaacaa |
28935600 |
T |
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| Q |
185 |
a |
185 |
Q |
| |
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| |
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| T |
28935601 |
a |
28935601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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