View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_34 (Length: 338)
Name: NF3482_low_34
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 7668635 - 7668327
Alignment:
| Q |
19 |
ctcttggctgcaaagaagattagaagagcaacatgcacaannnnnnnaatatcattggtttctgatgatttctctagagctaacaatacttacaatggaa |
118 |
Q |
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| T |
7668635 |
ctcttggctgcaaagaagattagaagagcaacatgcacaaattttttaatatcattggtttctgatgatttctctagagctaacaatacttacattggaa |
7668536 |
T |
|
| Q |
119 |
agttaaggttagtgtcccatatcaattcacatcttttaaggctaatgcattattattctagtgcttagttgatcattaagcaaaataacaggtctaattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7668535 |
agttaaggttagtgtcccatatcaattcacatcttttaaggctaatgcattattattctagtgcttagttgatcattaagcaaaataacaggtctaattt |
7668436 |
T |
|
| Q |
219 |
tctcggcaccaagttcacgatcttggatggtcatcctccacatgtttcttcgcttccatcgagttgcaagttgcaacaaaaggtccatatatgaagcaag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7668435 |
tctcggcaccaagttcacgatcttggatggtcatcctccacatgtttcttcgcttccatcgagttgcaagttgcaacaaaaggtccatatatgaagcaag |
7668336 |
T |
|
| Q |
319 |
tatttccta |
327 |
Q |
| |
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||||||||| |
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| T |
7668335 |
tatttccta |
7668327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 7089293 - 7088989
Alignment:
| Q |
19 |
ctcttggctgcaaagaagattagaagagcaacatgcacaannnnnnnaatatcattggtttctgatgatttctctagagctaacaatacttacaatggaa |
118 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7089293 |
ctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaatatcattggtttctgatgatttctctagagctaacaatacttacattggaa |
7089194 |
T |
|
| Q |
119 |
agttaaggttagtgtcccatatcaattcacatcttttaa-ggctaatgcattattattctagtgcttagttgatcattaagcaaaataacaggtctaatt |
217 |
Q |
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||||||||||||| ||| |||||| ||||| |||| | || |||||||||||||||||| || ||| ||||||||||||||| ||||||||||||| |
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| T |
7089193 |
agttaaggttagtctcctcaatcaatccacattttttcatggttaatgcattattattctactgtttacttgatcattaagcaatg-aacaggtctaatt |
7089095 |
T |
|
| Q |
218 |
ttctcggcaccaagttcacgatcttggatggtcatcctccacatgtttcttcgcttccatcgagttgcaagttgcaacaaaaggtccatatatgaagcaa |
317 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
7089094 |
ttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtcttcgcttccatcgagttgcaagttgcaacaaaaggttc--atatgaagcaa |
7088997 |
T |
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| Q |
318 |
gtatttcc |
325 |
Q |
| |
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||| |||| |
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| T |
7088996 |
gtacttcc |
7088989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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