View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3482_low_35 (Length: 338)
Name: NF3482_low_35
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 330
Target Start/End: Original strand, 2303825 - 2304128
Alignment:
| Q |
29 |
aatcttttactggttttagattagagtgaatgaaggattgcaattatgcacctatatgattcaaatcggcatgtaatactcctatatatgattcaaattt |
128 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2303825 |
aatcttttgctggttttagattagaatgaatgaaggattgcaattatgcacctatatgattcaaatcggcatgtaatactc--atatatgattcaaattt |
2303922 |
T |
|
| Q |
129 |
aaagatattacataatagaaatatatatgacttatattatgttgatttaaatatcttggttcttaactttgaataatgacatccacttttactctgtttt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2303923 |
aaagatattacataatagaaatatatatgacttatattatgttgatttaaatatcttggttcttaactttgaataatgacatccacttttactctgtttt |
2304022 |
T |
|
| Q |
229 |
atataatagttggtgggaagagaaaatatgtttgagttgtgatacttcatg----tcctattaagtcaaatgtgattatgagggattaaactctcgacct |
324 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2304023 |
atataatagttggtgggaagagaaaatatatttgagttgtgatacttcatgttaatcctattaagtcaaatgtgattatgagggactaaactctcgacct |
2304122 |
T |
|
| Q |
325 |
tcttct |
330 |
Q |
| |
|
||||| |
|
|
| T |
2304123 |
ccttct |
2304128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 96 - 321
Target Start/End: Complemental strand, 20911372 - 20911143
Alignment:
| Q |
96 |
ggcatgtaatactcctatatatgattcaaatttaaagatattacataatagaaatatatatgacttatattatgttgatttaaatatcttggttcttaac |
195 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20911372 |
ggcatgtaatactcctgtat--gattcaaatttaaagatattacacaatagaaatatatatgacttatattatgttgatttaaatatcttggttcttaac |
20911275 |
T |
|
| Q |
196 |
tttgaataatgacatccacttttactctgttttatataatagttg--gtgggaagagaaaatatgtttgagttgtgatacttcatg----tcctattaag |
289 |
Q |
| |
|
||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||| |||||||||||||| |||| | || ||||||| |
|
|
| T |
20911274 |
ttttaataatgacatccacttttactccgttatatataatagttggtgtgggaagagaaattatatttgagttgtgatatttcaagttaatcatattaag |
20911175 |
T |
|
| Q |
290 |
tcaaatgtgattatgagggattaaactctcga |
321 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
20911174 |
tcaaatgtgattaagagggattaaactctcga |
20911143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 96 - 321
Target Start/End: Complemental strand, 20925820 - 20925591
Alignment:
| Q |
96 |
ggcatgtaatactcctatatatgattcaaatttaaagatattacataatagaaatatatatgacttatattatgttgatttaaatatcttggttcttaac |
195 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20925820 |
ggcatgtaatactcctgtat--gattcaaatttaaagatattacacaatagaaatatatatgacttatattatgttgatttaaatatcttggttcttaac |
20925723 |
T |
|
| Q |
196 |
tttgaataatgacatccacttttactctgttttatataatagttg--gtgggaagagaaaatatgtttgagttgtgatacttcatg----tcctattaag |
289 |
Q |
| |
|
||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||| |||||||||||||| |||| | || ||||||| |
|
|
| T |
20925722 |
ttttaataatgacatccacttttactccgttatatataatagttggtgtgggaagagaaattatatttgagttgtgatatttcaagttaatcatattaag |
20925623 |
T |
|
| Q |
290 |
tcaaatgtgattatgagggattaaactctcga |
321 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
20925622 |
tcaaatgtgattaagagggattaaactctcga |
20925591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 20913987 - 20913941
Alignment:
| Q |
36 |
tactggttttagattagagtgaatgaaggattgcaattatgcaccta |
82 |
Q |
| |
|
||||||||||| |||||| |||| |||||||| |||||||||||||| |
|
|
| T |
20913987 |
tactggttttatattagaatgaacgaaggattacaattatgcaccta |
20913941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 94 - 264
Target Start/End: Original strand, 6701586 - 6701752
Alignment:
| Q |
94 |
tcggcatgtaatactcctatatatgattcaaatttaaagatattacataatagaaatatatatgacttatattatgttgatttaaatatcttggttctta |
193 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6701586 |
tcggcatgtaatactcctata--tgattcaaatttaaagatattatatactagaaatatatatgacttatattatgttgatttaaatatgttggttctta |
6701683 |
T |
|
| Q |
194 |
actttgaataatgacatccacttttactctgttttatataatagttggtgggaagagaaaatatgtttgag |
264 |
Q |
| |
|
||||| ||||||||||||||| ||||||| | ||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
6701684 |
acttttaataatgacatccacctttactccg--ttatataatagttggcaggaagagaaaatatatttgag |
6701752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 6699960 - 6700006
Alignment:
| Q |
36 |
tactggttttagattagagtgaatgaaggattgcaattatgcaccta |
82 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
6699960 |
tactggttttagattagaatgaatgaaggcttgcaattatgcaccta |
6700006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 8170525 - 8170575
Alignment:
| Q |
230 |
tataatagttggtgggaagagaaaatatgtttgagttgtgatacttcatgt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
8170525 |
tataatagttggtgggaagagaaaatatatttgagttttgatacttcatgt |
8170575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 1143562 - 1143635
Alignment:
| Q |
115 |
tatgattcaaatttaaagatattacataatagaaatatatatgacttatattatgttgatttaaatatcttggttc |
190 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| | | ||| ||||| ||||| ||||| |||| ||||||||| |
|
|
| T |
1143562 |
tatgattcaaatttgaagatattacataatagaa--acacatgtcttatcttatgatgattcaaatttcttggttc |
1143635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University