View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_36 (Length: 335)
Name: NF3482_low_36
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 24886130 - 24885820
Alignment:
| Q |
16 |
attttgaggcacaaaatacaattttccttctaaccttaaaaaattgacggtgatgccaatttaactatcaaccaatttgctactatctctatccataaat |
115 |
Q |
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| T |
24886130 |
attttgaggcacacaatacaattttccttctaaccttaaaaaattgacggtgatgctaatttaactatcaaccaatttgctactatctctatccataaat |
24886031 |
T |
|
| Q |
116 |
tactcttcaagtgaaaatattaattttctaatccataaacaattaatattaaataatccttaaaggcgaattttttgttaccaagatattgatacgaagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |
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| T |
24886030 |
tactcttcaagtgaaaatattaattttctaatccataaacaattaatattaaataatcctcaaaggcatattttttattaccaagatattgatacgaagt |
24885931 |
T |
|
| Q |
216 |
atgatagctaccaactactacatcaccatctgacatgtaaggaagaactgcaactcgcgatgggatcttcacgccttagggcgaataactgaaactctat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24885930 |
atgatagctaccaactactacatcaccatctgacatgcaaggaagaactgcaactcgtgatgggatcttcacgccttagggcgaataactgaaactctat |
24885831 |
T |
|
| Q |
316 |
tcttgttcatc |
326 |
Q |
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||||||||||| |
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| T |
24885830 |
tcttgttcatc |
24885820 |
T |
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