View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_37 (Length: 335)
Name: NF3482_low_37
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 49131844 - 49131526
Alignment:
| Q |
1 |
tcagagatagatagattaagatctgccctgatagctgcttgagtgggtgatgaatatcccacctgccaaaataatagctctcagctaaaaatgcaccata |
100 |
Q |
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| T |
49131844 |
tcagagatagatagattaagatctgccctgatagctgcttgagtgggtgatgaatatcccacctgccaaaataatagctttcagctaaaaatgcaccata |
49131745 |
T |
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| Q |
101 |
ttataattttaagaaaattcaaaagaaacttacacaagttccaaatgaaaaagaaccacaaacagcaacaaatgtgctgagcagaaccattccaatggat |
200 |
Q |
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| T |
49131744 |
ttataattttaagaaaattcaaaagaaacttacacaagttccaaatgaaaaagaaccgcaaacagcaacaaatgtgctgagcagaaccattccaatggat |
49131645 |
T |
|
| Q |
201 |
ccattttcagcccttttattagattcaatatcatgatagtcaacagtagcatcctttccatgttgaatgaagggctcttgtaaatctctatgtgtatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49131644 |
ccattttcagcccttttattagattcaatatcatgatagtcaacagtagcatcctttccatgttgaatgaagggctcttgtaaatctctatgtgtatttt |
49131545 |
T |
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| Q |
301 |
catgtccattctcaacatc |
319 |
Q |
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| T |
49131544 |
catgtccactctcaacatc |
49131526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 6922589 - 6922509
Alignment:
| Q |
128 |
acttacacaagttccaaatgaaaaagaaccacaaacagcaacaaatgtgctgagcagaaccattccaatggatccattttc |
208 |
Q |
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| T |
6922589 |
acttacacaagttccaaatgaaaaagaaccacaaacagcaacaaatgtgctaagcagaaccattccaatggatccattttc |
6922509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 6923065 - 6923009
Alignment:
| Q |
9 |
agatagattaagatctgccctgatagctgcttgagtgggtgatgaatatcccacctg |
65 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||| |||||| |||||||| |
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| T |
6923065 |
agatagattaagatcagccctgatagccgcttgagtgggtgctgaataacccacctg |
6923009 |
T |
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