View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3482_low_41 (Length: 323)

Name: NF3482_low_41
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3482_low_41
NF3482_low_41
[»] chr8 (11 HSPs)
chr8 (11-306)||(15704379-15704674)
chr8 (20-304)||(15697994-15698286)
chr8 (14-157)||(15806112-15806255)
chr8 (14-163)||(15814000-15814149)
chr8 (14-146)||(15712580-15712712)
chr8 (18-145)||(15800575-15800702)
chr8 (26-147)||(15792391-15792512)
chr8 (14-136)||(15723327-15723449)
chr8 (232-296)||(15723029-15723093)
chr8 (17-137)||(15693734-15693854)
chr8 (232-304)||(15805986-15806058)
[»] chr3 (3 HSPs)
chr3 (74-138)||(4549721-4549785)
chr3 (102-138)||(3079200-3079236)
chr3 (74-138)||(3093658-3093722)


Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 15704674 - 15704379
Alignment:
Q  11 cacagagaggatacattgaatggagaccttcctacaatcccttttactgtaattcaacatgcaactaattacttttcagaatcatcaaagttaggagaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15704674 cacagagaggatacattgaatggagaccttcctacaatcccttttactgtaattcaacatgcaactaattacttttcagaatcatcaaagttaggagaag 15704575  T
Q  111 gtggatttggtcctgtttacaaggtatgaaaaaattggatcaagaagccaagatgcacatgcatatataattttgtttcaaagcttcgacacattcatga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15704574 gtggatttggtcctgtttacaaggtatgaaaaaattggatcaagaagccaagatgcacatgcatatataattttgtttcaaagcttcgacacattcatga 15704475  T
Q  211 tcttttactttattttctattagggtaccttagcagatggaacagaaattgcggtaaaaaggcttgcagaaacgtctgatcaaggtgcagaggaat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15704474 tcttttactttattttctattagggtaccttagcagatggaacagaaattgcggtaaaaaggcttgcagaaacgtctgatcaaggtgcagaggaat 15704379  T

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Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 304
Target Start/End: Complemental strand, 15698286 - 15697994
Alignment:
Q  20 gatacattgaatggagaccttcctacaatcccttttactgtaattcaacatgcaactaattacttttcagaatcatcaaagttaggagaaggtggatttg 119  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||  ||||||||| |||||||||||||| ||||    
T  15698286 gatacattgaatggagaccttcctacgatccctttttctgtaattcaacatgccactaattacttttcatcatcatcaaaattaggagaaggtggctttg 15698187  T
Q  120 gtcctgtttacaaggtatgaaaaaattggatcaagaagccaagatgcacatgcatatataattttgtttcaaagcttcgacacattcatgatct-tttac 218  Q
    | ||||||| |||||||||||  || ||||| ||||||||||| | | |  ||||||||| ||||| |||||| ||  |||||||||||||||| || |     
T  15698186 gacctgttttcaaggtatgaatgaaatggataaagaagccaagtttc-ctagcatatatacttttggttcaaaactatgacacattcatgatctcttaaa 15698088  T
Q  219 tttattttcta--------ttagggtaccttagcagatggaacagaaattgcggtaaaaaggcttgcagaaacgtctgatcaaggtgcagagga 304  Q
    ||||||| |||        ||||||||| ||| ||||||| ||||||||||| || |||||||||||||||||||| | ||||||| |||||||    
T  15698087 tttatttcctatatctttgttagggtactttaccagatgggacagaaattgcagtcaaaaggcttgcagaaacgtcgggtcaaggttcagagga 15697994  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 15806255 - 15806112
Alignment:
Q  14 agagaggatacattgaatggagaccttcctacaatcccttttactgtaattcaacatgcaactaattacttttcagaatcatcaaagttaggagaaggtg 113  Q
    ||||| ||| ||||| ||||||||||||||| ||| ||||| | |||||||||||| || ||  || |||||||||| ||||| || |||||||||||||    
T  15806255 agagatgattcattgcatggagaccttcctataattcctttaagtgtaattcaacaggccacggataacttttcagagtcatctaaattaggagaaggtg 15806156  T
Q  114 gatttggtcctgtttacaaggtatgaaaaaattggatcaagaag 157  Q
    ||||||| ||||||||||||||||||| |||||| ||| |||||    
T  15806155 gatttggccctgtttacaaggtatgaataaattgtatccagaag 15806112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 15814149 - 15814000
Alignment:
Q  14 agagaggatacattgaatggagaccttcctacaatcccttttactgtaattcaacatgcaactaattacttttcagaatcatcaaagttaggagaaggtg 113  Q
    ||||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||    ||  || ||||||| || ||||  || |||||||||||||    
T  15814149 agagaggattcattcaatggagatcttcctacaatccctttaactgtaattcaacaaagcaccgataacttttcggagtcatttaaattaggagaaggtg 15814050  T
Q  114 gatttggtcctgtttacaaggtatgaaaaaattggatcaagaagccaaga 163  Q
    ||||||| || ||||||||||||| ||  ||||||||| ||||| |||||    
T  15814049 gatttggcccagtttacaaggtattaattaattggatctagaagtcaaga 15814000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 15712712 - 15712580
Alignment:
Q  14 agagaggatacattgaatggagaccttcctacaatcccttttactgtaattcaacatgcaactaattacttttcagaatcatcaaagttaggagaaggtg 113  Q
    ||||| ||| ||||||||||||||||||| | ||||||||| | |||| |||||||    ||| ||||||||||||| ||| | || |||||| ||||||    
T  15712712 agagatgattcattgaatggagaccttccaataatccctttaattgtacttcaacaaagcactgattacttttcagagtcaactaaattaggacaaggtg 15712613  T
Q  114 gatttggtcctgtttacaaggtatgaaaaaatt 146  Q
    |||||||  ||||||||||||| ||||| ||||    
T  15712612 gatttggatctgtttacaaggtttgaaagaatt 15712580  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 15800702 - 15800575
Alignment:
Q  18 aggatacattgaatggagaccttcctacaatcccttttactgtaattcaacatgcaactaattacttttcagaatcatcaaagttaggagaaggtggatt 117  Q
    ||||| |||| |||||||| ||||||||||||||||| ||| ||||| ||||    ||  || |||||||||| ||||  || |||||||||||||||||    
T  15800702 aggattcattcaatggagaacttcctacaatccctttaactataattgaacaaagtaccgatgacttttcagagtcatataaattaggagaaggtggatt 15800603  T
Q  118 tggtcctgtttacaaggtatgaaaaaat 145  Q
    ||| || |||||||||||||||| ||||    
T  15800602 tggcccagtttacaaggtatgaataaat 15800575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 15792512 - 15792391
Alignment:
Q  26 ttgaatggagaccttcctacaatcccttttactgtaattcaacatgcaactaattacttttcagaatcatcaaagttaggagaaggtggatttggtcctg 125  Q
    |||||||  |||||||| || ||||| || |||||||||||||| || || ||| |||||||||| || || || ||||||||||| |||||||| ||||    
T  15792512 ttgaatgcggaccttccgacgatccccttaactgtaattcaacaggccacaaataacttttcagagtcgtctaaattaggagaaggcggatttggccctg 15792413  T
Q  126 tttacaaggtatgaaaaaattg 147  Q
    | ||||||||||| | ||||||    
T  15792412 tctacaaggtatgcacaaattg 15792391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 15723449 - 15723327
Alignment:
Q  14 agagaggatacattgaatggagaccttcctacaatcccttttactgtaattcaacatgcaactaattacttttcagaatcatcaaagttaggagaaggtg 113  Q
    ||||| ||| ||||| ||||||||||||| | ||||||||| || |||||||| ||    |||||||| ||||| || || || ||  |||| |||||||    
T  15723449 agagatgattcattggatggagaccttccaataatccctttaacagtaattcatcagagcactaattatttttccgagtcgtctaaactaggggaaggtg 15723350  T
Q  114 gatttggtcctgtttacaaggta 136  Q
    ||||||| |||||||||||||||    
T  15723349 gatttggccctgtttacaaggta 15723327  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 15723093 - 15723029
Alignment:
Q  232 agggtaccttagcagatggaacagaaattgcggtaaaaaggcttgcagaaacgtctgatcaaggt 296  Q
    ||||||| ||| |||| || |||||||||||||||||||||||||||||| | ||| ||||||||    
T  15723093 agggtactttaccagacgggacagaaattgcggtaaaaaggcttgcagaagcatctaatcaaggt 15723029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 15693854 - 15693734
Alignment:
Q  17 gaggatacattgaatggagaccttcctacaatcccttttactgtaattcaacatgcaactaattacttttcagaatcatcaaagttaggagaaggtggat 116  Q
    ||||| ||| |||||| ||| |||||||||||||| || |    ||||||||||   |||||| ||||||||||| |||| || ||||| ||||||||||    
T  15693854 gaggaaacactgaatgcagatcttcctacaatcccattgatcacaattcaacattgtactaataacttttcagaaacatctaaattaggggaaggtggat 15693755  T
Q  117 ttggtcctgtttacaaggtat 137  Q
    ||||  |||| || |||||||    
T  15693754 ttggatctgtctataaggtat 15693734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 15806058 - 15805986
Alignment:
Q  232 agggtaccttagcagatggaacagaaattgcggtaaaaaggcttgcagaaacgtctgatcaaggtgcagagga 304  Q
    ||||||| ||| ||||||| |||||| |||| || |||||||||||||| | ||||| ||||||| |||||||    
T  15806058 agggtactttaccagatggcacagaagttgctgtgaaaaggcttgcagagatgtctggtcaaggttcagagga 15805986  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 4549785 - 4549721
Alignment:
Q  74 actaattacttttcagaatcatcaaagttaggagaaggtggatttggtcctgtttacaaggtatg 138  Q
    |||||| |||||||||||| ||  ||  |||||||||||||||||||||||||||||||||||||    
T  4549785 actaataacttttcagaattatgtaaactaggagaaggtggatttggtcctgtttacaaggtatg 4549721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 3079200 - 3079236
Alignment:
Q  102 taggagaaggtggatttggtcctgtttacaaggtatg 138  Q
    ||||||||||||||||||||||||| |||||||||||    
T  3079200 taggagaaggtggatttggtcctgtatacaaggtatg 3079236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 3093658 - 3093722
Alignment:
Q  74 actaattacttttcagaatcatcaaagttaggagaaggtggatttggtcctgtttacaaggtatg 138  Q
    |||||| |||||||||||| ||  ||  |||||| |||||| |||||||||||||||||||||||    
T  3093658 actaataacttttcagaattatgtaaactaggagcaggtggttttggtcctgtttacaaggtatg 3093722  T

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