View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_42 (Length: 320)
Name: NF3482_low_42
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 47705161 - 47704868
Alignment:
| Q |
1 |
cctttttagcacgtagcaatagtgtgt-gaataaaataatttaaaaggataaagctacaatagttctaatcctctcataattggtgatttggtgagagat |
99 |
Q |
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| T |
47705161 |
cctttttagcacgtagcaatagtgtgttgaataaaataatttaaaaggataaagctacaatagttctaatcctctcataattggtgatat--------at |
47705070 |
T |
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| Q |
100 |
atattattcattacgactcatgagaacaacaattgaaatgacgttttagttaaacattaaacaaatcttacttggttttagtgatgttttataattttaa |
199 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47705069 |
-tattgttcataacgactcatgagaacaacaattgaaatgacgttttagttaaacattaaacaaatcttacttggttttagtgatgttttataattttaa |
47704971 |
T |
|
| Q |
200 |
gttggatgcagtagttaattgaatttgaaaatggcccaattattgaaggcaaatatgcatgcgaatgcaacaaccaaaaggtctccaatccaagagattt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47704970 |
gttggatgcagtagttaattgaatttgaaaatggcccaattattgaaggcaaatatgcatgcgaatgcaacaaccaaagggtctccaatccaagagattt |
47704871 |
T |
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