View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3482_low_43 (Length: 318)
Name: NF3482_low_43
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_43 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 41209595 - 41209308
Alignment:
| Q |
13 |
aatattctgtgtataaacattcggatcatatactatgtcgcgtttattttaatcttatctataacttttaattggttgtgtctataaaaactgtgctcac |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41209595 |
aatattctgtgtataaacatttggatcatatactatgtcgagtttatgttaatcttatctataacttttaattggttgtgtctataaaaactgtgctcac |
41209496 |
T |
|
| Q |
113 |
acaagaattgttctaggagcatattcatgagttgcttgttgactgcatatttttccttcttctactaaataacagaaattttctacaatcgtatattttt |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41209495 |
acaagaattgttctaggagaatattcatgagttgcttgttgactgcatatttttccttcttctactaaataacagaaattttctacaatcatatattttt |
41209396 |
T |
|
| Q |
213 |
aagaagtctaatgaatataaattcttttgatcctcagacaaagacaagaaccaactaaatttcttttgatgctaaaatatgttctgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41209395 |
aagaagtctaatgaatataaattcttttgatcctcagacaaagacaagaaccaactaaatttcttttgatgctaaaatatgttctgtt |
41209308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University