View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_45 (Length: 304)
Name: NF3482_low_45
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 49881455 - 49881256
Alignment:
| Q |
4 |
gacaaatccatcaaggtaaagaatgaacaactatatttatctagtagaatagcttcaaaatcaagacatccttactataagaatgaatagtaatacatat |
103 |
Q |
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| T |
49881455 |
gacaaatccatcaaggtaaagaatgaacaactatatttatctagtagaatagtttcaaaatcaagacatccttactataagaatgaatagtaatacatat |
49881356 |
T |
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| Q |
104 |
ttaatattgaacacattcataattgatgtgagacattcacacttagactagtttgttggtattcaagtgtgaataatagtcatatattgactatgaataa |
203 |
Q |
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| T |
49881355 |
ttaacattgaacacattcataattgatgtgagacattcacacttagactagtttgttggtattcaagtgtgaataatagtcatatattgactatgaataa |
49881256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 49881058 - 49880971
Alignment:
| Q |
200 |
ataagtttaaagtggatataagagataagactaatattttcaatgccttaaagttttagacagagatgtggtgtcatgatctcttaac |
287 |
Q |
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| T |
49881058 |
ataaatttaaagtggatataagagataagactaatattttcaatgccttaaagttttagacagagatgtggtgtcatgatctcttaac |
49880971 |
T |
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