View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3482_low_49 (Length: 290)

Name: NF3482_low_49
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3482_low_49
NF3482_low_49
[»] chr2 (7 HSPs)
chr2 (18-276)||(33226774-33227027)
chr2 (18-130)||(43559580-43559691)
chr2 (24-153)||(19865799-19865931)
chr2 (24-153)||(19870700-19870832)
chr2 (24-153)||(19875601-19875733)
chr2 (19-153)||(5608417-5608551)
chr2 (19-70)||(18061222-18061273)
[»] chr5 (4 HSPs)
chr5 (19-168)||(29790484-29790633)
chr5 (19-154)||(33140400-33140540)
chr5 (19-66)||(35952023-35952070)
chr5 (105-154)||(15471258-15471307)
[»] chr6 (2 HSPs)
chr6 (19-166)||(20921235-20921380)
chr6 (73-167)||(20902749-20902842)
[»] chr1 (4 HSPs)
chr1 (33-167)||(32853551-32853685)
chr1 (38-167)||(41335851-41335966)
chr1 (19-70)||(7093537-7093588)
chr1 (20-70)||(15962315-15962365)
[»] chr8 (7 HSPs)
chr8 (30-145)||(41877354-41877470)
chr8 (96-167)||(42664341-42664412)
chr8 (19-167)||(29191192-29191340)
chr8 (19-102)||(10208042-10208124)
chr8 (22-144)||(25247061-25247184)
chr8 (30-141)||(33828148-33828259)
chr8 (19-57)||(16366887-16366925)
[»] chr4 (6 HSPs)
chr4 (19-167)||(35466324-35466472)
chr4 (24-145)||(47669007-47669130)
chr4 (22-141)||(1101183-1101303)
chr4 (23-145)||(55250378-55250504)
chr4 (19-79)||(1838565-1838625)
chr4 (119-168)||(1836295-1836344)
[»] chr7 (3 HSPs)
chr7 (23-145)||(34821185-34821306)
chr7 (22-83)||(47235873-47235934)
chr7 (19-167)||(19910016-19910163)
[»] chr3 (5 HSPs)
chr3 (23-146)||(45483863-45483989)
chr3 (23-95)||(39650395-39650467)
chr3 (19-70)||(570953-571004)
chr3 (19-70)||(26445931-26445982)
chr3 (24-153)||(33087966-33088095)
[»] scaffold0406 (1 HSPs)
scaffold0406 (22-144)||(12748-12871)
[»] scaffold0257 (1 HSPs)
scaffold0257 (23-78)||(16557-16612)
[»] scaffold0005 (1 HSPs)
scaffold0005 (119-173)||(270147-270201)
[»] scaffold0258 (1 HSPs)
scaffold0258 (25-70)||(18182-18227)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 33226774 - 33227027
Alignment:
Q  18 aatctctctttaaaccaacaaaattgtttggagtagtcaagtaata-tattaattgaatagctatattcaaaactatacaaattatgcaagatttatttt 116  Q
    |||||||||||||||| | ||||||||||||||||| ||| ||||| ||||||| |  ||||||||||||||||||||||     |||||||||||||||    
T  33226774 aatctctctttaaaccgataaaattgtttggagtagccaaataataatattaatagggtagctatattcaaaactataca-----tgcaagatttatttt 33226868  T
Q  117 tattttggggtagccaatgctaccccattgttatgaagggattcgcccctgggtgtgacaaaattgtctaagattcttcgatgctgaaagaagaaaaaga 216  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  33226869 tattttggggtttc-aatgctaccccattgttatgaagggattcgcccctgattgtgacaaaattgtctaagattcttcgatgctgaaagaagaaaaaga 33226967  T
Q  217 ccaaaaatttaaaattagtggctaaaatgtaactttctaatttttgacagagaacaaatt 276  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33226968 tcaaaaatttaaaattagtggctaaaatgtaactttctaatttttgacagagaacaaatt 33227027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 43559691 - 43559580
Alignment:
Q  18 aatctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattatgcaagatttattttt 117  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||  ||||||||||||||| || |||||||||||||  |||| ||||    
T  43559691 aatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaa-tgggtagctatattcaaaaatacacaaattatgcaaagtttaatttt 43559593  T
Q  118 attttggggtagc 130  Q
     ||||||||||||    
T  43559592 cttttggggtagc 43559580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 19865931 - 19865799
Alignment:
Q  24 tctttaaaccaacaaaa-ttgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaa-attatgcaagatttattttta-tt 120  Q
    ||||||||||||||||| ||||||||||||| ||| |||||||| ||| |  |||||| || ||||||||||| | ||||| |||||||| |||||  ||    
T  19865931 tctttaaaccaacaaaaattgtttggagtagccaaataatatatcaatggggtagctacatacaaaactatactacattattcaagattttttttttctt 19865832  T
Q  121 ttggggtagccaatgctaccccattgttatgaa 153  Q
    |||||||||| ||||||||||||||| ||||||    
T  19865831 ttggggtagcaaatgctaccccattgatatgaa 19865799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 19870832 - 19870700
Alignment:
Q  24 tctttaaaccaacaaaa-ttgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaa-attatgcaagatttattttta-tt 120  Q
    ||||||||||||||||| ||||||||||||| ||| |||||||| ||| |  |||||| || ||||||||||| | ||||| |||||||| |||||  ||    
T  19870832 tctttaaaccaacaaaaattgtttggagtagccaaataatatatcaatggggtagctacatacaaaactatactacattattcaagattttttttttctt 19870733  T
Q  121 ttggggtagccaatgctaccccattgttatgaa 153  Q
    |||||||||| ||||||||||||||| ||||||    
T  19870732 ttggggtagcaaatgctaccccattgatatgaa 19870700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 19875733 - 19875601
Alignment:
Q  24 tctttaaaccaacaaaa-ttgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaa-attatgcaagatttattttta-tt 120  Q
    ||||||||||||||||| ||||||||||||| ||| |||||||| ||| |  |||||| || ||||||||||| | ||||| |||||||| |||||  ||    
T  19875733 tctttaaaccaacaaaaattgtttggagtagccaaataatatatcaatggggtagctacatacaaaactatactacattattcaagattttttttttctt 19875634  T
Q  121 ttggggtagccaatgctaccccattgttatgaa 153  Q
    |||||||||| ||||||||||||||| ||||||    
T  19875633 ttggggtagcaaatgctaccccattgatatgaa 19875601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 5608551 - 5608417
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattatgcaagatttattttta 118  Q
    ||||| ||||||||||||||||||| || | |||  ||| |||||||||||| |  ||||||||   ||   ||||| |||||| |||| ||| || ||     
T  5608551 atctccctttaaaccaacaaaattgattagggtaaccaaataatatattaatgggttagctatacataatcttataccaattattcaagtttttttcttc 5608452  T
Q  119 ttttggggtagccaatgctaccccattgttatgaa 153  Q
    |||||||||||||||||||||||||| ||||||||    
T  5608451 ttttggggtagccaatgctaccccatggttatgaa 5608417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 18061222 - 18061273
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaat 70  Q
    |||||||||| ||||||| |||||||||||||||  ||| ||||||||||||    
T  18061222 atctctctttgaaccaaccaaattgtttggagtaaccaaataatatattaat 18061273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 29790633 - 29790484
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattatgcaagatttattttta 118  Q
    |||||| |||||||||||||||||||||||||| | ||| ||||||||||||    |||||| |||||||||||||| |||||| ||||||||||||||     
T  29790633 atctctttttaaaccaacaaaattgtttggagtggccaaataatatattaatgtggtagctacattcaaaactatactaattatacaagatttatttttc 29790534  T
Q  119 ttttggggtagccaatgctaccccattgttatgaagggattcgcccctgg 168  Q
    |||||||||||||||||||||||||||||| |||||||| || |||||||    
T  29790533 ttttggggtagccaatgctaccccattgttgtgaagggaatcacccctgg 29790484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 33140400 - 33140540
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattatgcaagatttattt--- 115  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||||||||| | ||| ||| ||  ||| |||||| |||||| |||| ||| |||       
T  33140400 atctctctttaaaccaataaaattgtttggagtagccaaataatatattaatgggataactacatataaacctataccaattattcaagtttttttttct 33140499  T
Q  116 --ttattttggggtagccaatgctaccccattgttatgaag 154  Q
      |||||||||||||||||||||||||| || | |||||||    
T  33140500 tcttattttggggtagccaatgctacccaatggctatgaag 33140540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 35952023 - 35952070
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaagtaatatat 66  Q
    |||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  35952023 atctctttttaaaccaacaaaattgtttggagtagccaaataatatat 35952070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 15471258 - 15471307
Alignment:
Q  105 aagatttatttttattttggggtagccaatgctaccccattgttatgaag 154  Q
    ||||||| ||||| ||||||||||||||||| ||||||||  ||||||||    
T  15471258 aagatttttttttcttttggggtagccaatgttaccccatgcttatgaag 15471307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 20921380 - 20921235
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattatgcaagatttattttta 118  Q
    |||||| |||||||||||||||||||||  ||||| |||||||||||| |  | |||| ||| |||||||||||||| |||||||| ||||||||||||     
T  20921380 atctctatttaaaccaacaaaattgtttaaagtagccaagtaatatataa--taaatatctacattcaaaactatactaattatgccagatttatttttc 20921283  T
Q  119 ttttggggtagccaatgctaccccattgttatgaagggattcgcccct 166  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||    
T  20921282 ttttggggtagccaatgctaccccattgatgtgaagggattcgcccct 20921235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 20902842 - 20902749
Alignment:
Q  73 aatagctatattcaaaactatacaaattatgcaagatttatttttattttggggtagccaatgctaccccattgttatgaagggattcgcccctg 167  Q
    |||| ||| |||||||||||||| |||||||| |||||||||||| ||||||||||| |||||||||||||||| | | ||||||||||||||||    
T  20902842 aatatctacattcaaaactatactaattatgccagatttatttttcttttggggtag-caatgctaccccattgatgtaaagggattcgcccctg 20902749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 167
Target Start/End: Complemental strand, 32853685 - 32853551
Alignment:
Q  33 caacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattatgcaagatttatttttattttggggtagcca 132  Q
    |||||||||||||||||||| |||  |||||||||| | |  ||| || ||||||||||||||||||||||||||||||||||||  |||||||||| ||    
T  32853685 caacaaaattgtttggagtaatcatataatatattattggtgtagttacattcaaaactatacaaattatgcaagatttatttttcatttggggtagtca 32853586  T
Q  133 atgctaccccattgttatgaagggattcgcccctg 167  Q
     ||||||||| ||  | ||||||||||||||||||    
T  32853585 ttgctaccccgtttatgtgaagggattcgcccctg 32853551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 167
Target Start/End: Complemental strand, 41335966 - 41335851
Alignment:
Q  38 aaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattatgcaagatttatttttattttggggtagccaatgct 137  Q
    |||||||||||||||||||||||||||| |||   ||||||||||||||||||||||        || |||||||||||| |||||||||||   |||||    
T  41335966 aaattgtttggagtagtcaagtaatataataa---aatagctatattcaaaactata--------gccagatttatttttcttttggggtag---atgct 41335881  T
Q  138 accccattgttatgaagggattcgcccctg 167  Q
    ||||||||| | |||||||||| |||||||    
T  41335880 accccattgatgtgaagggatttgcccctg 41335851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 7093588 - 7093537
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaat 70  Q
    |||||| ||| |||||||||||||||||||||||||  | ||||||||||||    
T  7093588 atctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaat 7093537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 15962365 - 15962315
Alignment:
Q  20 tctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaat 70  Q
    |||| ||||||||||||||||||| ||||||||  ||| ||||||||||||    
T  15962365 tctccctttaaaccaacaaaattgattggagtaaccaaataatatattaat 15962315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 41877470 - 41877354
Alignment:
Q  30 aaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattatgcaag-atttatttttattttggggta 128  Q
    |||||||||||||||||||||||| |||||||||||||||| |  |||||| || ||||||||||  |||||| ||||  ||| ||||| ||||||||||    
T  41877470 aaccaacaaaattgtttggagtagccaagtaatatattaatggggtagctacatacaaaactatattaattattcaagcttttttttttcttttggggta 41877371  T
Q  129 gccaatgctaccccatt 145  Q
    |||||||||||||||||    
T  41877370 gccaatgctaccccatt 41877354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 42664341 - 42664412
Alignment:
Q  96 aaattatgcaagatttatttttattttggggtagccaatgctaccccattgttatgaagggattcgcccctg 167  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||   |||||| |||||||||    
T  42664341 aaattatgcaagatttatttttcttttggggtagccaatgctacccgattgttgcaaagggaatcgcccctg 42664412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 29191192 - 29191340
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattatgcaagatttattttta 118  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||||||| || |||||| ||  ||| |||||| |||| | ||||  || || |||    
T  29191192 atctctttttaaaccaacaaaattgtttggagtaggcaaataatatattaatggagtagctacatataaacctataccaatt-ttcaag--tttttctta 29191288  T
Q  119 ---ttttggggtagccaatgctaccccattgttatgaagggattcgcccctg 167  Q
       ||||||||||||||||||||||||||   |||||||||| | |||||||    
T  29191289 ggcttttggggtagccaatgctaccccataactatgaagggaattgcccctg 29191340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 10208042 - 10208124
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattat 102  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| || ||| |||||| || ||||| ||||| ||||||    
T  10208042 atctctctttaaaccaacaaaattgtttggagtagtcaaacaatatatcaa-tgagtagctacatacaaaattatactaattat 10208124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 25247061 - 25247184
Alignment:
Q  22 tctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaac-tatacaaattatgcaagatttatttttatt 120  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||| |  |||||||||  ||||| ||  |   |||| ||||| ||  |||| ||    
T  25247061 tctctttaaatcaacaaaattgtttggagtagccaaataatatattaatggggtagctatatataaaacttaggcttgttattcaagaatttattttctt 25247160  T
Q  121 ttggggtagccaatgctaccccat 144  Q
    ||||||||||||||||||||||||    
T  25247161 ttggggtagccaatgctaccccat 25247184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 33828259 - 33828148
Alignment:
Q  30 aaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattatgcaagatttatttttattttggggtag 129  Q
    ||||||||||||||||||||||||||||  ||||| ||||| |  |||||| ||  | | |||    |||||| |||||||| ||| | |||||||||||    
T  33828259 aaccaacaaaattgtttggagtagtcaaaaaatatcttaatggggtagctacatatatacctaagttaattattcaagatttttttctcttttggggtag 33828160  T
Q  130 ccaatgctaccc 141  Q
    ||||||||||||    
T  33828159 ccaatgctaccc 33828148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 16366887 - 16366925
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaa 57  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  16366887 atctctattttaaccaacaaaattgtttggagtagtcaa 16366925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 35466472 - 35466324
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattatgcaagatttattttta 118  Q
    |||| |||||||||||||||||| ||||| | || ||||||||||||||||| || |||||| ||| || ||||||| ||| ||| | | |||||||||     
T  35466472 atctttctttaaaccaacaaaatcgtttgaaataatcaagtaatatattaatggagtagctacattgaagactatactaatcatgtatggtttatttttc 35466373  T
Q  119 ttttggggtagccaatgctaccccattgttatgaagggattcgcccctg 167  Q
    |||  |||||||||||||||| || ||| |  ||||||| |||||||||    
T  35466372 tttaagggtagccaatgctactccgttgatgggaagggaatcgcccctg 35466324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 47669007 - 47669130
Alignment:
Q  24 tctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattatgcaagatttattt--ttattt 121  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||| |  |||| |||| ||||||||||| | || | |||| ||| |||  || |||    
T  47669007 tctttaaaccaacaaaattgttcggagtagtcaaataatatattaatggggtagccatatacaaaactatactattttttcaagtttttttttcttcttt 47669106  T
Q  122 tggggtagccaatgctaccccatt 145  Q
    ||||||||||| ||||||||||||    
T  47669107 tggggtagccattgctaccccatt 47669130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 1101183 - 1101303
Alignment:
Q  22 tctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatat-tcaaaactatacaaattatgcaagatttatttttatt 120  Q
    ||||||| ||||||| |||||||||||||||| ||| |||||||||||| |   |||||||| | |||  ||| | |||||| |||||||| ||||| ||    
T  1101183 tctctttgaaccaactaaattgtttggagtagccaaataatatattaatgggggagctatatataaaatttatgctaattattcaagatttttttttctt 1101282  T
Q  121 ttggggtagccaatgctaccc 141  Q
     ||||||||||||||||||||    
T  1101283 ctggggtagccaatgctaccc 1101303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 55250504 - 55250378
Alignment:
Q  23 ctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctata--ttcaaaactatacaaattatgcaag--atttattttta 118  Q
    |||||| |||||||||||||||||| ||||||||| |||||||||||| |  ||||||||  | ||||||||||| | || | ||||   ||| |||||     
T  55250504 ctctttgaaccaacaaaattgtttgaagtagtcaaataatatattaatggggtagctatacgtacaaaactatactattttttcaagttttttctttttc 55250405  T
Q  119 ttttggggtagccaatgctaccccatt 145  Q
    |||| ||||||||||||||||||||||    
T  55250404 ttttcgggtagccaatgctaccccatt 55250378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 1838625 - 1838565
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagct 79  Q
    ||||||| || | |||||||||||||||||||||||||| |||||||||||| || |||||    
T  1838625 atctctcattgatccaacaaaattgtttggagtagtcaaataatatattaatggagtagct 1838565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 1836344 - 1836295
Alignment:
Q  119 ttttggggtagccaatgctaccccattgttatgaagggattcgcccctgg 168  Q
    ||||||||||||||||||||||||||||  ||||||  ||||||||||||    
T  1836344 ttttggggtagccaatgctaccccattgcaatgaagtcattcgcccctgg 1836295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 34821185 - 34821306
Alignment:
Q  23 ctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattatgcaagatttatttttatttt 122  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||| |  |||||| || ||||||||||| |||||| ||| |  |||| || ||||    
T  34821185 ctctttaaaccaacaaaattgtttggagtaatcaagtaatatatcaatggggtagctacatacaaaactatactaattattcaa-agatattattttttt 34821283  T
Q  123 ggggtagccaatgctaccccatt 145  Q
     || ||| |||||||||||||||    
T  34821284 tggatagtcaatgctaccccatt 34821306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 47235934 - 47235873
Alignment:
Q  22 tctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatat 83  Q
    |||||||||| ||||||||||||||||| ||| ||| |||||||||||| || |||||||||    
T  47235934 tctctttaaatcaacaaaattgtttggaatagccaaataatatattaatggagtagctatat 47235873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 19910163 - 19910016
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatacaaattatgcaagatttattttta 118  Q
    |||||| ||| |||||||||||||||||||||||| ||| |||||| ||||| |  ||||||  |  | | |||    || ||| |||||||| |||||     
T  19910163 atctctgttttaaccaacaaaattgtttggagtagccaaataatattttaatggggtagctacgtatatacctaagttaaatattcaagattt-tttttc 19910065  T
Q  119 ttttggggtagccaatgctaccccattgttatgaagggattcgcccctg 167  Q
    |||||||||||||||||||||||||| ||| |||||   ||||||||||    
T  19910064 ttttggggtagccaatgctaccccatggttgtgaagcccttcgcccctg 19910016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 45483863 - 45483989
Alignment:
Q  23 ctctttaaaccaacaaaa-ttgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatac-aaattatgcaaga-tttatttttat 119  Q
    |||||||||||||||||| ||||||||||||| ||| |||||||| ||| |  |||||| || ||||||||||| | ||||| ||||| ||| ||||| |    
T  45483863 ctctttaaaccaacaaaaattgtttggagtagccaaataatatatcaatggggtagctacatacaaaactatactacattattcaagattttttttttct 45483962  T
Q  120 tttggggtagccaatgctaccccattg 146  Q
    ||||||||||| |||||||||||||||    
T  45483963 tttggggtagcaaatgctaccccattg 45483989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 39650467 - 39650395
Alignment:
Q  23 ctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatac 95  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| |  | |||||||||||    
T  39650467 ctctttaaaccaacaaaattgtttggagtagccaagtaatatattaatgggatagcaacgtacaaaactatac 39650395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 571004 - 570953
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaat 70  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||||||    
T  571004 atctctctttaaaccaacaaaattatttggagtagccaaataatatattaat 570953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 26445982 - 26445931
Alignment:
Q  19 atctctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaat 70  Q
    |||||| |||||||||||||||||||||||||||| ||  ||||||||||||    
T  26445982 atctctttttaaaccaacaaaattgtttggagtagccagataatatattaat 26445931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 33087966 - 33088095
Alignment:
Q  24 tctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatattcaaaactatac-aaattatgcaagatttatttttatttt 122  Q
    ||||| ||| |||||||||||||| || || ||| ||||||||||||   ||| ||||||  ||||||| || ||||||| |||||||| ||||| ||||    
T  33087966 tctttgaactaacaaaattgtttgaagaagccaaataatatattaatgagataactatatataaaactaaactaaattattcaagattt-tttttctttt 33088064  T
Q  123 ggggtagccaatgctaccccattgttatgaa 153  Q
     ||||| ||||| |||| |||||| ||||||    
T  33088065 agggtaaccaattctactccattgatatgaa 33088095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 12748 - 12871
Alignment:
Q  22 tctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagctatat-tcaaaactatacaaattatgcaagatttatttttatt 120  Q
    ||||||| ||||||||||||||||||||||||  || ||||||||| || |  ||||||||| | |||  ||| | | |||| |||||||| ||||| |     
T  12748 tctctttgaaccaacaaaattgtttggagtagcaaaataatatattcatggggtagctatatattaaacttatgctagttattcaagatttttttttctc 12847  T
Q  121 ttggggtagccaatgctaccccat 144  Q
    ||||| ||||||||||||||||||    
T  12848 ttgggatagccaatgctaccccat 12871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 16557 - 16612
Alignment:
Q  23 ctctttaaaccaacaaaattgtttggagtagtcaagtaatatattaattgaatagc 78  Q
    |||||||||||||||||||||||||||||| | || ||||| |||||| |||||||    
T  16557 ctctttaaaccaacaaaattgtttggagtaattaaataatacattaatggaatagc 16612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 270201 - 270147
Alignment:
Q  119 ttttggggtagccaatgctaccccattgttatgaagggattcgcccctgggtgtg 173  Q
    |||||||||||||||||||||||||| ||| |||||   ||||||||||||||||    
T  270201 ttttggggtagccaatgctaccccatagttgtgaagcctttcgcccctgggtgtg 270147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 18182 - 18227
Alignment:
Q  25 ctttaaaccaacaaaattgtttggagtagtcaagtaatatattaat 70  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||||    
T  18182 ctttaaaccaacaaaattatttggagtagacaaataatatattaat 18227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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