View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_5 (Length: 811)
Name: NF3482_low_5
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 620; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 19 - 702
Target Start/End: Complemental strand, 49824552 - 49823869
Alignment:
| Q |
19 |
aaaagtccttattttagatggtcttcttgcttattttcacatgtatgtcaactgcagcatattcaaattgagggcggtgattctacaaaatctgataaca |
118 |
Q |
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| T |
49824552 |
aaaagtccttattttagatggtcatcttgcttattttcacatgtatgtcaactgcagcatattcaaattgagggcggtgattctacaaaatctgataaca |
49824453 |
T |
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| Q |
119 |
agatgaaggacaatgagaatacaccaagcagtaagggagtgggaaggaataaggattgtgaagacataacacctagccgtaagggagtggaaaatactaa |
218 |
Q |
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| T |
49824452 |
agatgaaggacaatgagaatacaccaagcagtaagggagtgggaaggaataaggattgtgaagacataacacctagccgtaagggagtggaaaatactaa |
49824353 |
T |
|
| Q |
219 |
ggacaatgacaagacaccaagcagtgaggtaattggcaagcggatggacaatgaaaaaacaccaaagagcaagggagttggcaagaggacaactgatagt |
318 |
Q |
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| T |
49824352 |
ggacaatgacaagacaccaagcagtgaggtaattggcaagcggatggacaatgaaaaaacaccgaagagcaagggagttggcaagaggacaactgatagt |
49824253 |
T |
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| Q |
319 |
gtgggctctgattttgacaaacctgaagtcggcgaagggtcaattaagaaacctatgccagtgtctaagcgcattaagacttcgaaagtttaaaaatccc |
418 |
Q |
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| T |
49824252 |
gtgggctctgattttgacaaacctgaagtcggcgaagggtcaattaacaaacctatgccagtgtctaagcgcattaagacttcgaaagtttaaaaatccc |
49824153 |
T |
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| Q |
419 |
atgtcagttgactatgcctttgtttgtctgccttgcatctaattgagtattgttgattcagacatagtttaagaagtagtgtcaacttgtgctttttgtg |
518 |
Q |
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| T |
49824152 |
atgtcagttgactatgcctttgtttgtctgccttgcatctaattgagtattgttgattcagacatagttt---aagtagtgtcaacttgtgctttttgtg |
49824056 |
T |
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| Q |
519 |
tatcgtggattgaagctcctccttttattttcgatgatgtactttaatttttctggaatcgtaatgaattagccacactaatcaaattctaag---nnnn |
615 |
Q |
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| T |
49824055 |
tatcgtggattgaagctcctccttttattttcgatgatgtactttaatttttctggaatcgtaatgaattagccacactaatcaaattctaagttttttt |
49823956 |
T |
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| Q |
616 |
nnnnnatttggaaccaaaaccgcaatttagacatcaagtataaatgttattaaaaagtgcaactatcttatattgagatgatttgat |
702 |
Q |
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| T |
49823955 |
tttttatttggaaccaaaaccgcaatttagacatcaagtataaatgttattaaaaagtgcaactatcttatattgagatgatttgat |
49823869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 694 - 801
Target Start/End: Complemental strand, 49823654 - 49823542
Alignment:
| Q |
694 |
tgatttgatgctttttcaaatttaagtaaagtgaatgtatattgatgcaagta--tatactgtttccctttcttccctttctgat---tagtagaaaagg |
788 |
Q |
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| T |
49823654 |
tgatttgatgctttttcaaatttaagtaaagtgaatgtatattgatgcaagtatatatactgtttccctttcttccctttctgattagtagtagaaaagg |
49823555 |
T |
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| Q |
789 |
acttgaaattgat |
801 |
Q |
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| T |
49823554 |
acttgaaattgat |
49823542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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