View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3482_low_51 (Length: 284)

Name: NF3482_low_51
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3482_low_51
NF3482_low_51
[»] chr1 (8 HSPs)
chr1 (4-201)||(36575401-36575598)
chr1 (1-202)||(26530950-26531152)
chr1 (97-201)||(36573962-36574066)
chr1 (97-201)||(26529508-26529612)
chr1 (78-162)||(35062603-35062687)
chr1 (128-201)||(36574956-36575029)
chr1 (96-204)||(49919657-49919765)
chr1 (128-201)||(26530502-26530575)
[»] chr2 (8 HSPs)
chr2 (1-201)||(31620525-31620725)
chr2 (1-147)||(36666256-36666403)
chr2 (97-201)||(31622062-31622166)
chr2 (78-202)||(35298555-35298679)
chr2 (78-204)||(40894809-40894935)
chr2 (97-166)||(36669112-36669181)
chr2 (78-201)||(35306047-35306170)
chr2 (97-201)||(4753528-4753632)
[»] chr3 (8 HSPs)
chr3 (1-201)||(11137912-11138113)
chr3 (78-204)||(9099557-9099683)
chr3 (214-272)||(34624777-34624835)
chr3 (78-201)||(20997633-20997756)
chr3 (78-202)||(18912547-18912671)
chr3 (78-137)||(37464926-37464985)
chr3 (78-200)||(37463680-37463802)
chr3 (96-201)||(18939810-18939915)
[»] chr4 (10 HSPs)
chr4 (46-197)||(23545255-23545406)
chr4 (78-198)||(8480886-8481006)
chr4 (78-201)||(31410549-31410671)
chr4 (78-201)||(41774644-41774767)
chr4 (97-179)||(31409335-31409414)
chr4 (78-201)||(41780191-41780314)
chr4 (52-201)||(52190281-52190430)
chr4 (97-201)||(52189186-52189290)
chr4 (1-49)||(23543934-23543983)
chr4 (97-201)||(30829927-30830031)
[»] chr8 (6 HSPs)
chr8 (1-139)||(12887086-12887225)
chr8 (78-202)||(5014762-5014886)
chr8 (78-201)||(5005708-5005831)
chr8 (97-200)||(3872243-3872346)
chr8 (119-201)||(37241028-37241110)
chr8 (97-202)||(17863465-17863570)
[»] chr5 (2 HSPs)
chr5 (97-200)||(16727813-16727916)
chr5 (78-151)||(35967398-35967471)
[»] chr7 (6 HSPs)
chr7 (82-201)||(45291895-45292014)
chr7 (82-201)||(45296020-45296139)
chr7 (83-201)||(38516620-38516738)
chr7 (78-147)||(42537770-42537839)
chr7 (78-137)||(41740964-41741023)
chr7 (97-201)||(41739622-41739726)
[»] chr6 (1 HSPs)
chr6 (82-201)||(9448708-9448827)
[»] scaffold0115 (2 HSPs)
scaffold0115 (78-176)||(4361-4459)
scaffold0115 (78-176)||(12101-12199)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 36575401 - 36575598
Alignment:
Q  4 tcaccaacatggacatccatgtaagcatctgacatggccaaactaaatgacacatcattacatttaacataagtttaacgttttggacttgtatgactaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36575401 tcaccaacatggacatccatgtaagcatctgacatggccaaactaaatgacacatcattacatttaacagaagtttaacgttttggacttgtatgactaa 36575500  T
Q  104 cggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtttactc 201  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||  |||||||||||  ||||||||||| ||||||||    
T  36575501 cggaacagacattgaggaagtttttggttcgttttcttgatttaaggacgtgtctgatagcgaggtacactttcagggactcaaatgagggtttactc 36575598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 26530950 - 26531152
Alignment:
Q  1 ccctcaccaacatggacatcc-atgtaagcatctgacatggccaaactaaatgacacatcattacatttaacataagtttaacgttttggacttgtatga 99  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||| |||||||| ||| |||||||||||||| |||||||    
T  26530950 ccctccccaacatggacatcccatgtaagcatctgacatggccaaactaaatgacacgccattagatttaacagaaggttaacgttttggacgtgtatga 26531049  T
Q  100 ctaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtttac 199  Q
    ||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||| | |||||||  |||||||||||  ||  ||||||| ||||||    
T  26531050 ctagcagaagagacattgagggagtttttggttcgttttcttgattcagggacgtgtctaatagcgaggtacactttcagggaccaaaatgagggtttac 26531149  T
Q  200 tca 202  Q
    |||    
T  26531150 tca 26531152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 36574066 - 36573962
Alignment:
Q  97 tgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtt 196  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||  |||||||||||  ||  ||||||| |||    
T  36574066 tgactaacggaacagacattgagggagtttttagttcgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacctaaatgagtgtt 36573967  T
Q  197 tactc 201  Q
    |||||    
T  36573966 tactc 36573962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 26529612 - 26529508
Alignment:
Q  97 tgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtt 196  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||  |||||||||||  || |||||||| |||    
T  26529612 tgactaacagaacaaacattgagggagtttttagttcgttttcttgattcagggacgtgtctgatagcgaggtacactttcagggacccaaatgagggtt 26529513  T
Q  197 tactc 201  Q
    |||||    
T  26529512 tactc 26529508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 35062687 - 35062603
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgata 162  Q
    |||| ||||||||| || ||||||||||||||| |||||| |||||||||||||| ||||  |||||||| ||| ||| ||||||    
T  35062687 ttaatgttttggacgtggatgactaacggaacaaacattgggggagtttttggttagtttaattgattcagggatgtggttgata 35062603  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 36575029 - 36574956
Alignment:
Q  128 tggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtttactc 201  Q
    ||||||| ||||||||| || |||| |||||||||||||  |||||||||||  || ||||||| |||||||||    
T  36575029 tggttcgatttcttgatccagggacatgtttgatagcgaggtacactttcagggacccaaatgaaagtttactc 36574956  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 49919657 - 49919765
Alignment:
Q  96 atgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagt 195  Q
    |||||| | |||| |||| ||| ||||||||||||| |||||  ||||| || ||| |||  ||||||||||  |||||||||   || |||||||||||    
T  49919657 atgactgatggaagagactttgggggagtttttggtgcgtttcattgatccagggaagtgactgatagcgatgcacactttcaaggacccaaatgagagt 49919756  T
Q  196 ttactcaaa 204  Q
    |||||||||    
T  49919757 ttactcaaa 49919765  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 26530575 - 26530502
Alignment:
Q  128 tggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtttactc 201  Q
    ||||||| ||||||||| || |||| |||||||||||||  |||||||||||  || |||||||  ||||||||    
T  26530575 tggttcgatttcttgatccagggacatgtttgatagcgaggtacactttcagggacccaaatgaaggtttactc 26530502  T

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Target: chr2 (Bit Score: 149; Significance: 9e-79; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 31620725 - 31620525
Alignment:
Q  1 ccctcaccaacatggacatccatgtaagcatctgacatggccaaactaaatgacacatcattacatttaacataagtttaacgttttggacttgtatgac 100  Q
    |||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  31620725 ccctcaccaacatggttatccatgtaagcatctgacatggtcaaactaaatgacacatcattacatttaatagaagtttaacgttttggacttgtatgac 31620626  T
Q  101 taacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtttact 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||  |||||||||||  ||||||||||| |||||||    
T  31620625 taacggaacagacattgagcgagtttttggttcgttttcttgattcaaggacgtatctgatagcgaggtacactttcagggactcaaatgagggtttact 31620526  T
Q  201 c 201  Q
    |    
T  31620525 c 31620525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 36666403 - 36666256
Alignment:
Q  1 ccctcaccaacatggacatcc-atgtaagcatctgacatggccaaactaaatgacacatcattacatttaacataagtttaacgttttggacttgtatga 99  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| || |||||||    
T  36666403 ccctcaccaacatggacatcccatgtaagcatctgacatggccatactaaatgacacatcattagatttaacagaagtttaacgttttgaacgtgtatga 36666304  T
Q  100 ctaacggaacagacattgagggagtttttggttcgttttcttgattca 147  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  36666303 ctaacggaacagacattgaggaagtttttagttcgttttcttgattca 36666256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 31622062 - 31622166
Alignment:
Q  97 tgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtt 196  Q
    |||| ||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||| |||||| |||  |||||||||||  || ||||| || |||    
T  31622062 tgacaaacggaacaaacattgagggagtttttagtttgttttcttgattcagggacgtggttgataacgaggtacactttcagggacccaaataagggtt 31622161  T
Q  197 tactc 201  Q
    |||||    
T  31622162 tactc 31622166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 35298679 - 35298555
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttc 177  Q
    |||||||||||||   | |||||||||| || |||| ||  ||||||||||  | ||||||||||||||| ||||||| ||||||||||  |||||||||    
T  35298679 ttaacgttttggatgggaatgactaacgaaagagactttcggggagttttttttgcgttttcttgattcagggacgtggttgatagcgaggtacactttc 35298580  T
Q  178 agaaactcaaatgagagtttactca 202  Q
    || ||| |||||||| |||||||||    
T  35298579 aggaacccaaatgagggtttactca 35298555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 40894809 - 40894935
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttc 177  Q
    |||||||||||||| || ||||||||||||| |||||||| |||||||||| ||||||||  ||||| || ||||||   |||||||||  ||||||||     
T  40894809 ttaacgttttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtacctgatagcgaggtacactttt 40894908  T
Q  178 agaaactcaaatgagagtttactcaaa 204  Q
    ||  |  |||||||| |||||||||||    
T  40894909 agggatccaaatgagggtttactcaaa 40894935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 36669112 - 36669181
Alignment:
Q  97 tgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcga 166  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||||  |||||||||    
T  36669112 tgactaacagaacagacattgagggagtttttagtttgttttcttgattcagggacgtggctgatagcga 36669181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 201
Target Start/End: Original strand, 35306047 - 35306170
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttc 177  Q
    |||||||||||||   | ||||||||| ||| |||| ||  ||||||||||  ||||||||||||||||| |||| |||||||||||||  |||||||||    
T  35306047 ttaacgttttggatgagaatgactaacagaagagactttcggggagtttttttttcgttttcttgattcagggacatgtttgatagcgaggtacactttc 35306146  T
Q  178 agaaactcaaatgagagtttactc 201  Q
    ||  ||  ||||||| ||||||||    
T  35306147 agggacctaaatgagggtttactc 35306170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 4753632 - 4753528
Alignment:
Q  97 tgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtt 196  Q
    ||||||||  |||| |||||||||||||||||| ||| |||  ||||| || ||||  || ||||||||| | ||||||||||  || |||| ||| |||    
T  4753632 tgactaacaaaacatacattgagggagtttttgattcatttaattgatccagggactggtctgatagcgagagacactttcagggacccaaacgagggtt 4753533  T
Q  197 tactc 201  Q
    |||||    
T  4753532 tactc 4753528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 11138113 - 11137912
Alignment:
Q  1 ccctcaccaacatggacatcc-atgtaagcatctgacatggccaaactaaatgacacatcattacatttaacataagtttaacgttttggacttgtatga 99  Q
    ||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||| | |||| | |||||||||||||||||| ||||| |    
T  11138113 ccctcaccatcatggacatcccatataagcatctgacatggcaaaactaaatgacacatcattagagttaatagaagtttaacgttttggacgtgtataa 11138014  T
Q  100 ctaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtttac 199  Q
    |||| | ||||||||||||||||||||||||||||||||| |||| || ||| |||| |||||||||  |||| ||| ||| |  |||||||| ||||||    
T  11138013 ctaaagaaacagacattgagggagtttttggttcgttttcatgatccagggatgtgtctgatagcgaggtacatttttagagaaccaaatgagggtttac 11137914  T
Q  200 tc 201  Q
    ||    
T  11137913 tc 11137912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 204
Target Start/End: Complemental strand, 9099683 - 9099557
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttc 177  Q
    |||||||||||||||| | |||||||||||||  |||||||  |||||||||||||||||  |||||||| ||| ||| ||||||||||  ||||||||     
T  9099683 ttaacgttttggacttatttgactaacggaaccaacattgaaagagtttttggttcgtttcattgattcagggatgtgcttgatagcgaggtacacttta 9099584  T
Q  178 agaaactcaaatgagagtttactcaaa 204  Q
    ||  || |||||||| |||||||||||    
T  9099583 agggacccaaatgagggtttactcaaa 9099557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 34624777 - 34624835
Alignment:
Q  214 atgtctacatttggactattttttagagggacgtatactaaatgcatcatattaatatt 272  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  34624777 atgtctacatttggactattttttggagggacatatactaaatgcatcatattaatatt 34624835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 201
Target Start/End: Complemental strand, 20997756 - 20997633
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttc 177  Q
    |||||||||||||||| | ||||||||| |||  ||||||| ||||||||||||| ||||| ||||| |  ||| ||| ||||||||||  |||| ||||    
T  20997756 ttaacgttttggacttatttgactaacgaaaccaacattgaaggagtttttggtttgttttattgatcctgggatgtgcttgatagcgaggtacattttc 20997657  T
Q  178 agaaactcaaatgagagtttactc 201  Q
    ||  || |||||||| ||||||||    
T  20997656 agggacccaaatgagggtttactc 20997633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 18912671 - 18912547
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttc 177  Q
    |||||||||||||   | ||||||||||||| |||| || |||||||||||  | ||||||||||||||| |||| || || |||| ||  |||||||||    
T  18912671 ttaacgttttggatgggaatgactaacggaagagactttcagggagttttttttgcgttttcttgattcagggacatggttaatagtgaggtacactttc 18912572  T
Q  178 agaaactcaaatgagagtttactca 202  Q
    ||  || |||||||| |||||||||    
T  18912571 agggacccaaatgagggtttactca 18912547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 37464926 - 37464985
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttt 137  Q
    |||||||||||||| || ||||| ||||||| ||||||| ||||||||||||||| ||||    
T  37464926 ttaacgttttggacgtgaatgacaaacggaagagacattcagggagtttttggtttgttt 37464985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 37463802 - 37463680
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttc 177  Q
    |||||||||||||| |  |||||||| |||| |||||||    |||||||||| ||||||  ||||| || ||||||| |||||||||| | ||||||||    
T  37463802 ttaacgttttggacgtaaatgactaatggaagagacattagatgagtttttggatcgtttcattgatccagggacgtgcttgatagcgagaaacactttc 37463703  T
Q  178 agaaactcaaatgagagtttact 200  Q
    || ||| |||  ||| |||||||    
T  37463702 aggaacccaagcgagggtttact 37463680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 18939810 - 18939915
Alignment:
Q  96 atgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagt 195  Q
    ||||||||||||| |||| ||  |||||||| |  | ||||||||||| | | ||||||| ||||||||||  |||||||||||  || |||||||| ||    
T  18939810 atgactaacggaagagactttcggggagtttgttttgcgttttcttgacttagggacgtggttgatagcgaagtacactttcagggacccaaatgagggt 18939909  T
Q  196 ttactc 201  Q
    ||||||    
T  18939910 ttactc 18939915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 197
Target Start/End: Original strand, 23545255 - 23545406
Alignment:
Q  46 ctaaatgacacatcattacatttaacataagtttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgatt 145  Q
    |||||||||||||||||| | |||||| |||||||| ||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||||||    
T  23545255 ctaaatgacacatcattagagttaacaaaagtttaatgttttggacgtgtatgactaatgaaacagacattgaaggagtttttggttcgttttcttgatt 23545354  T
Q  146 caaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagttt 197  Q
    ||  ||||||| ||||||| |  ||||||||||   ||||||||||| ||||    
T  23545355 cagagacgtgtctgatagcaaggtacactttcaaggactcaaatgagggttt 23545406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 8480886 - 8481006
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttc 177  Q
    |||||||||||||   | ||||||||||||| |||| ||| ||||||||||||| |||||  ||||| || |||||||  ||||||||| ||||||||||    
T  8480886 ttaacgttttggatgggaatgactaacggaagagactttgggggagtttttggtgcgtttcattgatccagggacgtgactgatagcgagatacactttc 8480985  T
Q  178 agaaactcaaatgagagttta 198  Q
    ||  |||||||||||||||||    
T  8480986 agggactcaaatgagagttta 8481006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 201
Target Start/End: Original strand, 31410549 - 31410671
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttc 177  Q
    |||||||||||||| ||| |||||||||||||||| ||||| |||||||||| |||||||  |||||||| | |||||| |||||||||  | |||||||    
T  31410549 ttaacgttttggacgtgtgtgactaacggaacagatattga-ggagtttttgattcgtttaattgattcaggaacgtgtctgatagcgaggtgcactttc 31410647  T
Q  178 agaaactcaaatgagagtttactc 201  Q
    || |||  |||| || ||||||||    
T  31410648 aggaacctaaataagggtttactc 31410671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 201
Target Start/End: Complemental strand, 41774767 - 41774644
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttc 177  Q
    |||||||||||||   | ||||||||||||| | || ||  ||||||||||  | ||||||||||||||| ||||||| ||||||||||  |||||||||    
T  41774767 ttaacgttttggatcggaatgactaacggaagacactttcggggagttttttttgcgttttcttgattcagggacgtggttgatagcgaggtacactttc 41774668  T
Q  178 agaaactcaaatgagagtttactc 201  Q
    ||  || |||||||||||||||||    
T  41774667 agggacccaaatgagagtttactc 41774644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 31409414 - 31409335
Alignment:
Q  97 tgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcag 179  Q
    ||||||||||||||||   ||||||||||||||||||||||  ||||| |||||||||| ||||||||||  | |||||||||    
T  31409414 tgactaacggaacaga---tgagggagtttttggttcgtttatttgatccaaggacgtggttgatagcgaggtgcactttcag 31409335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 201
Target Start/End: Original strand, 41780191 - 41780314
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttc 177  Q
    |||||||||||||   | ||||||||||||| | || ||   |||||||||  | ||||||||||||||| | ||||| ||||||||||  |||||||||    
T  41780191 ttaacgttttggatcggaatgactaacggaagacactttcgaggagttttttttgcgttttcttgattcaggaacgtggttgatagcgaggtacactttc 41780290  T
Q  178 agaaactcaaatgagagtttactc 201  Q
    ||| || |||||||| ||||||||    
T  41780291 agagacccaaatgagggtttactc 41780314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 201
Target Start/End: Original strand, 52190281 - 52190430
Alignment:
Q  52 gacacatcattacatttaacataagtttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaagga 151  Q
    |||||||||  ||||||||||  |  |||||||||||||    | ||||||||  ||||||||||| |||||||||||||||||||  ||||| || |||    
T  52190281 gacacatcagcacatttaacaccaagttaacgttttggatgcatttgactaacaaaacagacattgggggagtttttggttcgtttaattgatccatgga 52190380  T
Q  152 cgtgtttgatagcgatatacactttcagaaactcaaatgagagtttactc 201  Q
      ||  ||||||||| || |||||||||  || |||||||| ||||||||    
T  52190381 tctggctgatagcgagatgcactttcagggacccaaatgagggtttactc 52190430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 52189290 - 52189186
Alignment:
Q  97 tgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtt 196  Q
    |||||||||||||| |||||||| ||||||||| || ||||  ||||| || ||| |||  |||||||||  | |||||||||  || |||||||| |||    
T  52189290 tgactaacggaacatacattgagcgagtttttgatttgtttaattgatccagggatgtggctgatagcgaggtgcactttcagggacccaaatgagggtt 52189191  T
Q  197 tactc 201  Q
    |||||    
T  52189190 tactc 52189186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23543934 - 23543983
Alignment:
Q  1 ccctcaccaacatggacat-ccatgtaagcatctgacatggccaaactaa 49  Q
    ||||||||||||||||||| |||||||||||||| ||||||  |||||||    
T  23543934 ccctcaccaacatggacatcccatgtaagcatctcacatggaaaaactaa 23543983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 30830031 - 30829927
Alignment:
Q  97 tgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtt 196  Q
    ||||||||| ||||  ||||| |||||||||||||||||||  |||||  | ||| |||  |||||||||   ||||||||||  || |||||||| |||    
T  30830031 tgactaacgaaacaatcattgggggagtttttggttcgtttcattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtt 30829932  T
Q  197 tactc 201  Q
    |||||    
T  30829931 tactc 30829927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 12887225 - 12887086
Alignment:
Q  1 ccctcaccaacatggacat-ccatgtaagcatctgacatggccaaactaaatgacacatcattacatttaacataagtttaacgttttggacttgtatga 99  Q
    ||||||||||||||||||| ||||||||||||||  |||| | ||| ||||||||||||||| | | |||| | |||||||| ||||||||  |||||||    
T  12887225 ccctcaccaacatggacattccatgtaagcatctagcatgacaaaattaaatgacacatcatcaaagttaatagaagtttaatgttttggatatgtatga 12887126  T
Q  100 ctaacggaacagacattgagggagtttttggttcgttttc 139  Q
    |||||| || |||||||||| || ||||||||||||||||    
T  12887125 ctaacgaaatagacattgagagaatttttggttcgttttc 12887086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 5014762 - 5014886
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttc 177  Q
    |||||||||||||   | ||||||||||||| | || ||   |||||||||  | ||||||||||||||||||||||| ||||||||||  |||||||||    
T  5014762 ttaacgttttggatcggaatgactaacggaagacactttcgaggagttttttttgcgttttcttgattcaaggacgtggttgatagcgaggtacactttc 5014861  T
Q  178 agaaactcaaatgagagtttactca 202  Q
    ||  || |||||||| |||||||||    
T  5014862 agggacccaaatgagggtttactca 5014886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 201
Target Start/End: Complemental strand, 5005831 - 5005708
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttc 177  Q
    |||||||||||||   | ||||||||||||| | || ||   |||||||||  | ||||||||||||||| ||||||| ||||||||||  |||||||||    
T  5005831 ttaacgttttggatcggaatgactaacggaagacactttcgaggagttttttttgcgttttcttgattcagggacgtggttgatagcgaggtacactttc 5005732  T
Q  178 agaaactcaaatgagagtttactc 201  Q
    ||  || |||||||| ||||||||    
T  5005731 agggacccaaatgagggtttactc 5005708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 3872243 - 3872346
Alignment:
Q  97 tgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtt 196  Q
    |||||||||||| |  ||||||| |||||||||||||||||  ||||| || |||||||  |||||||||  | |||||||||  || |||| ||| |||    
T  3872243 tgactaacggaataaccattgagagagtttttggttcgtttaattgatacagggacgtggctgatagcgaggtgcactttcagggacccaaacgagggtt 3872342  T
Q  197 tact 200  Q
    ||||    
T  3872343 tact 3872346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 37241110 - 37241028
Alignment:
Q  119 gggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtttactc 201  Q
    ||||||||||||| |||||  ||||| |||| |||||  ||||||||| |||||||||||| ||| |||| |||  |||||||    
T  37241110 gggagtttttggtgcgtttcattgatccaagaacgtgactgatagcgagatacactttcaggaacccaaacgaggatttactc 37241028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 17863570 - 17863465
Alignment:
Q  97 tgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtt 196  Q
    ||||| |||||||| ||||||  |||||||||||||  |||  ||||| |||||| |||  |||||||||  | |||||||||  || |||||||| |||    
T  17863570 tgactgacggaacatacattggaggagtttttggtttatttaattgatccaaggatgtggctgatagcgaggtgcactttcagggacccaaatgagggtt 17863471  T
Q  197 tactca 202  Q
    ||||||    
T  17863470 tactca 17863465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 16727916 - 16727813
Alignment:
Q  97 tgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtt 196  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||| | |||||  |||||||||  |||||||||||  || |||||||| |||    
T  16727916 tgactaacggaacagacattgaggaagtttttagttcgttttcttgattcaggaacgtggctgatagcgaggtacactttcagcgacccaaatgagggtt 16727817  T
Q  197 tact 200  Q
    ||||    
T  16727816 tact 16727813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 35967471 - 35967398
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaagga 151  Q
    |||| ||||||||| ||  |||||||||||||| |||||| |||||||||||||| ||||  ||||||| ||||    
T  35967471 ttaatgttttggacgtggttgactaacggaacaaacattgggggagtttttggttagtttaattgattcgagga 35967398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 45291895 - 45292014
Alignment:
Q  82 cgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaa 181  Q
    |||||||||  || ||||||||||||| |||| |||||||||||||||||||| || ||||||||| ||| |||  |||||||||  |||||||||||      
T  45291895 cgttttggatgtgaatgactaacggaagagactttgagggagtttttggttcgattccttgattcagggatgtgcctgatagcgaggtacactttcaggg 45291994  T
Q  182 actcaaatgagagtttactc 201  Q
    || |||||||| ||||||||    
T  45291995 acccaaatgagggtttactc 45292014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 45296020 - 45296139
Alignment:
Q  82 cgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaa 181  Q
    |||||||||  || ||||||||||||| |||| |||||||||||||||||||| || |||||| || ||| |||  |||||||||  |||||||| ||      
T  45296020 cgttttggatgtgaatgactaacggaagagactttgagggagtttttggttcgattccttgatccatggatgtgcctgatagcgaggtacacttttaggg 45296119  T
Q  182 actcaaatgagagtttactc 201  Q
    || |||||||| ||||||||    
T  45296120 acccaaatgagggtttactc 45296139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 38516738 - 38516620
Alignment:
Q  83 gttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaa 182  Q
    ||||||||  || ||||||||||| | | || |||||||||||||||||| | || |||||| || ||| |||| |||||||||| |||||||||||  |    
T  38516738 gttttggatgtgaatgactaacgggagaaactttgagggagtttttggttggattccttgatccagggatgtgtctgatagcgatgtacactttcaggga 38516639  T
Q  183 ctcaaatgagagtttactc 201  Q
    | |||||||| ||||||||    
T  38516638 cccaaatgagggtttactc 38516620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 42537839 - 42537770
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattca 147  Q
    |||||||||||||| || ||||| ||||||| |||||||  |||||||||||||||||||  ||||||||    
T  42537839 ttaacgttttggacgtgaatgacaaacggaagagacattcggggagtttttggttcgtttcattgattca 42537770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 41740964 - 41741023
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttt 137  Q
    |||||||||||||| || ||||||||||||||| | |||| |||||||||||||| ||||    
T  41740964 ttaacgttttggacgtggatgactaacggaacaaatattgggggagtttttggttagttt 41741023  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 41739726 - 41739622
Alignment:
Q  97 tgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaaactcaaatgagagtt 196  Q
    ||||||||| ||||  ||||| |||||||||||||||||||  |||||  | ||| |||  |||||||||   | |||||||| ||| |||||||| |||    
T  41739726 tgactaacgaaacaatcattgggggagtttttggttcgtttcattgatctagggatgtgcctgatagcgagcaatactttcaggaacccaaatgagggtt 41739627  T
Q  197 tactc 201  Q
    |||||    
T  41739626 tactc 41739622  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 9448708 - 9448827
Alignment:
Q  82 cgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacactttcagaa 181  Q
    |||||||||  || |||||||| |||| |||| |||||||||||||||||||| || |||||| || ||| |||| |||||||||  |||||||||||      
T  9448708 cgttttggatgtgaatgactaaaggaagagactttgagggagtttttggttcgattccttgatccagggatgtgtctgatagcgaggtacactttcaggg 9448807  T
Q  182 actcaaatgagagtttactc 201  Q
    || |||||||| ||||||||    
T  9448808 acccaaatgagggtttactc 9448827  T

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Target: scaffold0115 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 4459 - 4361
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacacttt 176  Q
    |||||||||||||   | |||||||| |||| |||| ||| ||||||||||||| |||||  |||||  | |||||||  |||||||||||||||||||    
T  4459 ttaacgttttggatgggaatgactaatggaagagactttgggggagtttttggtgcgtttcattgatctagggacgtggctgatagcgatatacacttt 4361  T

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Target: scaffold0115; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 12199 - 12101
Alignment:
Q  78 ttaacgttttggacttgtatgactaacggaacagacattgagggagtttttggttcgttttcttgattcaaggacgtgtttgatagcgatatacacttt 176  Q
    |||||||||||||   | |||||||| |||| |||| ||| ||||||||||||| |||||  |||||  | |||||||  |||||||||||||||||||    
T  12199 ttaacgttttggatgggaatgactaatggaagagactttgggggagtttttggtgcgtttcattgatctagggacgtggctgatagcgatatacacttt 12101  T

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