View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3482_low_52 (Length: 284)
Name: NF3482_low_52
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_52 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 104 - 284
Target Start/End: Original strand, 29930526 - 29930711
Alignment:
| Q |
104 |
tggtgtttggccaaaagtgattagtgaagtggatcgacttttttctcactttcttccaagtggcgtttgtttgcttgctacaacttccattgcaa----t |
199 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
29930526 |
tggtgattggccaaaagtgattagtgaagtggatcgacctttttctcactttcttccaagtggcatttgtttgcttgctacaacttccattgcaattttt |
29930625 |
T |
|
| Q |
200 |
aatctaaattaatta-ttattannnnnnnnnnnaaatctggttagcattttctttattttattttccatctatcaatttccaaaat |
284 |
Q |
| |
|
||||||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29930626 |
aatctaaattaattatttttttaatatttctttaaatctggttagcagtttctttattttattttccatctatcaatttccaaaat |
29930711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 29930391 - 29930450
Alignment:
| Q |
2 |
atttgaaaggttgaatattgttgaagatgaaagttgaagaagaaagagtgcagagattcgaca |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29930391 |
atttgaaaggttgaatattgttgaagatgaaa---gaagaagaaagagtgcagagattcgaca |
29930450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University