View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_55 (Length: 260)
Name: NF3482_low_55
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 41638565 - 41638812
Alignment:
| Q |
1 |
ccatcacttgcaagcctccatgaaacacagtcatcactactttgaggatcagggggagacaacctcttgatgtcatcaattatatttgagggaagtgtat |
100 |
Q |
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| T |
41638565 |
ccatcacttgcaagcctccatgaaacacagtcatcactactttgaggatcagggggagacaacctcttgatgtcatcaattatatttgagggaagtgtat |
41638664 |
T |
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| Q |
101 |
ttatcaaattactcaggtcccatcttcctcaaactgtcaacataatcggcaaccacttttgttgcttcaaaatgctgaatctgactaaccgtatagtcaa |
200 |
Q |
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| T |
41638665 |
ttatcaaattactcaggtcccatcttcctcaaactgtcaacataatcggcaaccacttttgttgcttcaaaatgctgaatctgactaaccgtatagtcaa |
41638764 |
T |
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| Q |
201 |
taacgagcatatcagtgtcagcccagttatctatccttccagaattca |
248 |
Q |
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| T |
41638765 |
taacgggcatatcagtgtcagcccagttatctatccttccagaattca |
41638812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 231
Target Start/End: Complemental strand, 2719214 - 2719080
Alignment:
| Q |
96 |
tgtatttatcaaattactcaggtcccatcttcctcaaactgtcaacataatcggcaaccacttttgttgcttcaaaatgctgaatctgactaaccgtata |
195 |
Q |
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| T |
2719214 |
tgtatttatcaaactactctggtcccatctttcttca-ctgtcaacataattttcaaccacttttgttgcttcaaaatgctcagtcagactaaccgtata |
2719116 |
T |
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| Q |
196 |
gtcaataacga-gcatatcagtgtcagcccagttatc |
231 |
Q |
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| T |
2719115 |
gtttat-acgaggcatatcagtgtcagcccagttatc |
2719080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2719289 - 2719214
Alignment:
| Q |
1 |
ccatcacttgcaagcctccatgaaacacagtcatcactactttgaggatcagggggagacaacctcttgatgtcat |
76 |
Q |
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|||||||||| ||||||||| | || ||||||||||| ||||||||||| ||| |||| ||||||||||||||||| |
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| T |
2719289 |
ccatcacttgtaagcctccaagcaagacagtcatcaccactttgaggatgaggtggaggcaacctcttgatgtcat |
2719214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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