View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3482_low_56 (Length: 253)
Name: NF3482_low_56
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_56 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 28902914 - 28902678
Alignment:
| Q |
14 |
gatgaatgcaatgtttcactttaaagaataaaagtacgatcctagttatagaattttaccttatagactataacaaaatgtcaaaatgtgacatttttct |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28902914 |
gatgaatgcaatgtttcactttaaagaataaaagtacgatcctagttatagaattttaccttatagactataacaaaatgtcaaaatgcgacatttttct |
28902815 |
T |
|
| Q |
114 |
cattgaacttcaaaattgttttagttcattattttcttggttggaaactcagaattgagtaacgaaagttcatctctttatccaggctgtatcaattttc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||||||| |
|
|
| T |
28902814 |
cattgaacttcaaaattgttttagttcattattttcttggttggaaactctgaattgagtaaagaaagttcat---tttatccatgctgtatcaattttc |
28902718 |
T |
|
| Q |
214 |
tctttattcgtatatcttaagattatgtattttttcattt |
253 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
28902717 |
tctttattcatatatcttatgattatgtattttttcattt |
28902678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 28936019 - 28935894
Alignment:
| Q |
106 |
atttttctcattgaacttcaaaattgttttagttcattattttcttggttggaaactcagaattgagtaacgaaagttcatctctttatccaggctgtat |
205 |
Q |
| |
|
||||||||||| |||||| || | ||||||| |||||| ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
28936019 |
atttttctcatagaactttaataatgttttatttcattcttttcttggttggaaactcggaattgagtaaag-aagttcatctctttatccaggcggtat |
28935921 |
T |
|
| Q |
206 |
caattttctctttattcgtatatctta |
232 |
Q |
| |
|
|||||||||||| | | ||||||||| |
|
|
| T |
28935920 |
aaattttctctttctccatatatctta |
28935894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 28892821 - 28892733
Alignment:
| Q |
165 |
gaattgagtaacgaaagttcatctctttatccaggctgtatcaattttctctttattcgtatatcttaagattatgtattttttcattt |
253 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| | |||| |||| ||||||| |||||||||| |
|
|
| T |
28892821 |
gaattgagtaaagaaagttcatctcttcatccaggctgtataaatttcctctttatccatataccttatcattatgtgctttttcattt |
28892733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 100 - 241
Target Start/End: Complemental strand, 34009775 - 34009634
Alignment:
| Q |
100 |
tgtgacatttttctcattgaacttcaaaattgttttagttcattattttcttggttggaaactcagaattgagtaacgaaagttcatctctttatccagg |
199 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
34009775 |
tgtgacttttttcttattgaacttcaatattgttttatttcattattttcttggttggaatctcagaattgagtaaaataagttcatctctatatccagg |
34009676 |
T |
|
| Q |
200 |
ctgtatcaattttctctttattcgtatatcttaagattatgt |
241 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
34009675 |
ctgtatcaattttctctttatttgtatatcttataattatgt |
34009634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University