View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3482_low_58 (Length: 251)

Name: NF3482_low_58
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3482_low_58
NF3482_low_58
[»] chr4 (33 HSPs)
chr4 (121-251)||(49881595-49881725)
chr4 (34-122)||(3821198-3821286)
chr4 (46-122)||(39716729-39716805)
chr4 (51-124)||(35716315-35716388)
chr4 (51-122)||(29712368-29712440)
chr4 (51-106)||(30529295-30529350)
chr4 (34-121)||(35498532-35498619)
chr4 (51-122)||(51347487-51347558)
chr4 (51-122)||(53991568-53991639)
chr4 (54-124)||(24948306-24948376)
chr4 (34-95)||(5752477-5752538)
chr4 (51-123)||(39406248-39406320)
chr4 (51-122)||(50119974-50120045)
chr4 (46-117)||(52799029-52799100)
chr4 (67-121)||(47560251-47560305)
chr4 (51-119)||(13171627-13171695)
chr4 (51-122)||(3757725-3757796)
chr4 (51-122)||(20588561-20588632)
chr4 (51-105)||(24547347-24547401)
chr4 (34-122)||(12682755-12682843)
chr4 (34-117)||(15704115-15704198)
chr4 (51-122)||(36743218-36743289)
chr4 (51-95)||(8956942-8956986)
chr4 (51-95)||(8986914-8986958)
chr4 (51-95)||(37349812-37349856)
chr4 (51-105)||(17730449-17730503)
chr4 (34-91)||(46104209-46104266)
chr4 (51-111)||(578621-578681)
chr4 (51-95)||(9888906-9888950)
chr4 (51-122)||(43021891-43021962)
chr4 (34-122)||(2116088-2116176)
chr4 (51-95)||(16896011-16896055)
chr4 (51-91)||(35833430-35833470)
[»] chr6 (10 HSPs)
chr6 (34-123)||(15045546-15045635)
chr6 (46-122)||(1218517-1218593)
chr6 (46-122)||(24443926-24444002)
chr6 (51-119)||(4897511-4897579)
chr6 (46-122)||(18323834-18323910)
chr6 (34-122)||(6969295-6969383)
chr6 (55-122)||(9737773-9737840)
chr6 (34-123)||(28573828-28573917)
chr6 (34-122)||(4107953-4108041)
chr6 (48-91)||(9981273-9981316)
[»] chr7 (20 HSPs)
chr7 (34-122)||(39276612-39276700)
chr7 (34-121)||(21670792-21670879)
chr7 (51-121)||(29467751-29467821)
chr7 (46-119)||(17169026-17169099)
chr7 (34-122)||(21600970-21601058)
chr7 (34-121)||(11840447-11840534)
chr7 (34-121)||(39651148-39651235)
chr7 (34-122)||(9143472-9143563)
chr7 (46-122)||(48529945-48530021)
chr7 (51-122)||(3791478-3791549)
chr7 (34-122)||(688062-688150)
chr7 (34-122)||(27737741-27737829)
chr7 (51-121)||(44804520-44804590)
chr7 (51-105)||(35157012-35157066)
chr7 (51-116)||(29684130-29684195)
chr7 (34-122)||(49146122-49146211)
chr7 (51-105)||(34872185-34872239)
chr7 (34-122)||(4848347-4848436)
chr7 (51-95)||(24684650-24684694)
chr7 (46-91)||(31899997-31900042)
[»] chr1 (21 HSPs)
chr1 (46-123)||(17364615-17364692)
chr1 (46-123)||(33359698-33359775)
chr1 (46-122)||(29188312-29188388)
chr1 (51-121)||(33075673-33075743)
chr1 (34-124)||(52306066-52306156)
chr1 (46-122)||(1367290-1367366)
chr1 (51-122)||(22198924-22198995)
chr1 (46-122)||(4890097-4890173)
chr1 (34-122)||(16300388-16300476)
chr1 (51-123)||(29844898-29844970)
chr1 (34-123)||(47134702-47134791)
chr1 (51-122)||(1826792-1826863)
chr1 (52-124)||(19322362-19322434)
chr1 (51-119)||(46626341-46626409)
chr1 (55-121)||(42678374-42678440)
chr1 (51-114)||(10766193-10766256)
chr1 (51-122)||(38894754-38894825)
chr1 (34-91)||(5426246-5426303)
chr1 (41-122)||(10698125-10698206)
chr1 (51-95)||(28570751-28570795)
chr1 (51-95)||(19400757-19400801)
[»] scaffold0009 (2 HSPs)
scaffold0009 (47-123)||(225433-225509)
scaffold0009 (51-119)||(108549-108617)
[»] chr5 (16 HSPs)
chr5 (34-121)||(3088031-3088118)
chr5 (34-122)||(30140501-30140589)
chr5 (46-122)||(41689274-41689350)
chr5 (46-121)||(25698729-25698804)
chr5 (34-121)||(33709813-33709900)
chr5 (51-122)||(36886985-36887056)
chr5 (51-122)||(12592485-12592556)
chr5 (51-105)||(30754425-30754479)
chr5 (51-123)||(17643402-17643474)
chr5 (66-121)||(26602200-26602255)
chr5 (46-122)||(34715602-34715671)
chr5 (51-95)||(6305466-6305510)
chr5 (51-95)||(43138563-43138607)
chr5 (51-95)||(754461-754505)
chr5 (51-91)||(12422361-12422401)
chr5 (51-85)||(42977849-42977883)
[»] scaffold0057 (1 HSPs)
scaffold0057 (46-123)||(20591-20668)
[»] chr2 (14 HSPs)
chr2 (34-123)||(28607219-28607308)
chr2 (51-119)||(17836969-17837037)
chr2 (46-121)||(4292794-4292869)
chr2 (51-122)||(32677200-32677271)
chr2 (46-120)||(9545787-9545861)
chr2 (46-119)||(2952759-2952832)
chr2 (34-122)||(10050189-10050277)
chr2 (51-119)||(9920926-9920994)
chr2 (34-123)||(24520864-24520953)
chr2 (47-117)||(18096495-18096565)
chr2 (51-105)||(19486205-19486259)
chr2 (51-124)||(10876588-10876659)
chr2 (51-125)||(19486128-19486204)
chr2 (51-105)||(42781027-42781081)
[»] scaffold0385 (1 HSPs)
scaffold0385 (51-117)||(8317-8383)
[»] chr3 (20 HSPs)
chr3 (51-119)||(11955542-11955610)
chr3 (51-123)||(22473642-22473714)
chr3 (34-124)||(8393560-8393650)
chr3 (34-95)||(18682515-18682576)
chr3 (34-123)||(22519188-22519276)
chr3 (34-121)||(19895645-19895732)
chr3 (51-122)||(29530578-29530649)
chr3 (51-122)||(8528120-8528191)
chr3 (51-106)||(19368958-19369013)
chr3 (34-105)||(55297343-55297414)
chr3 (51-105)||(35855220-35855274)
chr3 (51-95)||(28981834-28981878)
chr3 (34-91)||(26777850-26777907)
chr3 (51-119)||(26102167-26102235)
chr3 (41-121)||(33872205-33872285)
chr3 (41-122)||(4139354-4139435)
chr3 (47-119)||(9563228-9563300)
chr3 (57-124)||(11602187-11602254)
chr3 (34-91)||(53800529-53800586)
chr3 (51-95)||(40831943-40831987)
[»] chr8 (21 HSPs)
chr8 (46-121)||(18378814-18378889)
chr8 (51-122)||(36776403-36776474)
chr8 (51-123)||(24053912-24053984)
chr8 (68-123)||(41152666-41152721)
chr8 (51-100)||(41972977-41973026)
chr8 (51-105)||(25346050-25346104)
chr8 (51-105)||(40587709-40587763)
chr8 (51-95)||(8760727-8760771)
chr8 (51-95)||(25836282-25836326)
chr8 (51-105)||(9472168-9472221)
chr8 (34-91)||(25620714-25620771)
chr8 (51-92)||(45435019-45435060)
chr8 (51-95)||(1942815-1942859)
chr8 (51-95)||(8162792-8162836)
chr8 (51-95)||(40616111-40616155)
chr8 (34-105)||(41534248-41534319)
chr8 (55-105)||(42245753-42245803)
chr8 (34-91)||(7389228-7389285)
chr8 (51-88)||(32844182-32844219)
chr8 (34-122)||(4466420-4466508)
chr8 (51-95)||(44389022-44389066)
[»] scaffold0759 (1 HSPs)
scaffold0759 (34-122)||(5891-5979)
[»] scaffold0069 (1 HSPs)
scaffold0069 (48-123)||(11771-11846)
[»] scaffold0051 (1 HSPs)
scaffold0051 (34-123)||(62060-62149)
[»] scaffold0381 (1 HSPs)
scaffold0381 (51-95)||(9595-9639)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 121 - 251
Target Start/End: Complemental strand, 49881725 - 49881595
Alignment:
Q  121 ataagcatgatcttgatctgttgatcttcacagttaagttattcttttggggagagaggatccgttgagtcccacacgagcaagcgagaataataaattt 220  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49881725 ataagcatgatcttgattatttgatcttcacagttaagttattcttttggggagagaggatccgttgagtcccacacgagcaagcgagaataataaattt 49881626  T
Q  221 ttattatttcttacacaagaaaaaccaagtc 251  Q
    |||||||||||||||||||||||||||||||    
T  49881625 ttattatttcttacacaagaaaaaccaagtc 49881595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 3821198 - 3821286
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||| ||||  |||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  3821198 ctcaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattacttttaatataagtatatagat 3821286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 39716729 - 39716805
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  39716729 ttaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 39716805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 35716315 - 35716388
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagataa 124  Q
    |||||||||||||| |||||||||||||||||||||| || || | ||||||||||||||||||||||||||||    
T  35716315 ttaccaaattgccccttataggggcaaaatggtaaatccatggaacatttcttttaatataagtatatagataa 35716388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 29712440 - 29712368
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttc-ttttaatataagtatatagat 122  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||    
T  29712440 ttaccaaattgccccttataggggcaaaatggtaaatttaagggacatttctttttaatataagtatatagat 29712368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 30529295 - 30529350
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttta 106  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30529295 ttaccaaattgccccttataggggcaaaatggtaaattcaagggatatttctttta 30529350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 35498532 - 35498619
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    |||||| ||||  ||||||||||||||| ||||||||||||||||||| ||||||||||||  ||||||||| |||| ||||||||||    
T  35498532 ctcaaccaattagtaatttaccaaattgtcctttataggggcaaaatgataaattcaagggccatttctttttatattagtatataga 35498619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 51347558 - 51347487
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||  ||| |||||||||||    
T  51347558 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttcttattagtatatagat 51347487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 53991568 - 53991639
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||||||||||||||||||| || || | ||||||||||||||||||||||||||    
T  53991568 ttaccaaattgccccttataggggcaaaatggtaaatccatggaacatttcttttaatataagtatatagat 53991639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 24948306 - 24948376
Alignment:
Q  54 ccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagataa 124  Q
    ||||||||||| ||||||| |||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  24948306 ccaaattgccccttataggagcaaaatggtaaattcaaaggacatttctttttatataagtatatagataa 24948376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 5752538 - 5752477
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    |||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5752538 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaggga 5752477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 39406248 - 39406320
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    |||||||||| ||| |||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||    
T  39406248 ttaccaaattaccccttataggggctaaatggtaaattcaaggaacatttctttttatataagtatatagata 39406320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 50119974 - 50120045
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||  ||| |||||||||||    
T  50119974 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacattccttttcttattagtatatagat 50120045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 52799100 - 52799029
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtata 117  Q
    ||||||||||||||||||| | ||||||| ||||||||||||| || ||| |||||||||||||||||||||    
T  52799100 ttaatttaccaaattgcccctaataggggtaaaatggtaaatttaaaggacatttcttttaatataagtata 52799029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 47560251 - 47560305
Alignment:
Q  67 tataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  47560251 tataggggcaaaatggtaaattcaagggacattacttttaatataagtatataga 47560305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 13171695 - 13171627
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatata 119  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||| ||||  ||| ||||||||    
T  13171695 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttattttcttattagtatata 13171627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 3757796 - 3757725
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||||||||||||||||||||||| | | |||||||||  ||| |||||||||||    
T  3757796 ttaccaaattgccccttataggggcaaaatggtaaattcaatgaacatttcttttcttattagtatatagat 3757725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 20588632 - 20588561
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||  ||| |||||||||||    
T  20588632 ttaccaaattgccccttatagaggcaaaatggtgaattcaagggacatttcttttcttattagtatatagat 20588561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 24547401 - 24547347
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttt 105  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  24547401 ttaccaaattgccccttatagggacaaaatggtaaattcaagggacatttctttt 24547347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 12682755 - 12682843
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||| ||||| |||||||||||||||||| | ||||||||||||||||||| |||| ||| |||   ||| |||| |||||||||||    
T  12682755 ctcaaccaatttataatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 12682843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 15704198 - 15704115
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtata 117  Q
    |||||| ||||  |||||||||||||| ||| ||||||||||||||||||||||| || | | ||| ||||| |||||||||||    
T  15704198 ctcaaccaattagtaatttaccaaatttccccttataggggcaaaatggtaaatttaaagaacattactttttatataagtata 15704115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 36743218 - 36743289
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||| | |||||||||||||| |||||| |||||||||  ||| |||||||||||    
T  36743218 ttaccaaattgccccttatagagacaaaatggtaaatttaagggacatttcttttcttattagtatatagat 36743289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 8956986 - 8956942
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||    
T  8956986 ttaccaaattgccccttataggggcaaaatggtaaattcatggga 8956942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 8986958 - 8986914
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||    
T  8986958 ttaccaaattgccccttataggggcaaaatggtaaattcatggga 8986914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 37349856 - 37349812
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||    
T  37349856 ttaccaaattgccccttataggggcaaaatggtaaattcatggga 37349812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 17730503 - 17730449
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttt 105  Q
    |||||||||||||| ||||||| |||||||||||||||||| | | |||||||||    
T  17730503 ttaccaaattgccccttataggagcaaaatggtaaattcaaagcacatttctttt 17730449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 46104266 - 46104209
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaa 91  Q
    |||||| ||||| |||||||||||||||||| | || |||||||||||||||| ||||    
T  46104266 ctcaaccaatttgtaatttaccaaattgcccctcattggggcaaaatggtaaaatcaa 46104209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 578621 - 578681
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatata 111  Q
    ||||||||||| || ||||||||||||||||||||||  | | || |||||||||||||||    
T  578621 ttaccaaattgtcccttataggggcaaaatggtaaatcaatgagacatttcttttaatata 578681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 9888906 - 9888950
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    ||||||||||| || ||||||||||||||||||||||||| ||||    
T  9888906 ttaccaaattgacccttataggggcaaaatggtaaattcatggga 9888950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 43021962 - 43021891
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||| | | |||| ||||| ||||||||||||||| | |||||||||  ||| |||||||||||    
T  43021962 ttaccaaattgcacctaatagaggcaagatggtaaattcaaggaacatttcttttcttattagtatatagat 43021891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 2116176 - 2116088
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||| ||||| |||||||||||||||||| |  || || |||||||||||| |||| ||| |||   ||| |||| |||||||||||    
T  2116176 ctcaaccaatttataatttaccaaattgcccctcctaaggacaaaatggtaaaatcaatggacattaacttttatattagtatatagat 2116088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 16896055 - 16896011
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    ||||||||| |||| ||||| ||||||||| ||||||||||||||    
T  16896055 ttaccaaatagccccttataagggcaaaattgtaaattcaaggga 16896011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 35833430 - 35833470
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaa 91  Q
    |||||||||||||| | ||||||||||||||||||| ||||    
T  35833430 ttaccaaattgcccctcataggggcaaaatggtaaaatcaa 35833470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 15045546 - 15045635
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15045546 ctcaacaaatttgtaatttaccaaattaccctttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatatagata 15045635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 1218593 - 1218517
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  1218593 ttaatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 1218517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 24444002 - 24443926
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24444002 ttaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggatatttcttttaatataagtatatagat 24443926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 4897511 - 4897579
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatata 119  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4897511 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatata 4897579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 18323910 - 18323834
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||||||  || |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  18323910 ttaatttaccaaattgcttttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 18323834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 6969295 - 6969383
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||   ||| |||| |||||||||||    
T  6969295 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattaacttttatattagtatatagat 6969383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 9737773 - 9737840
Alignment:
Q  55 caaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||| |||||||| ||||||||||||||||||||| |||||||||  ||| |||||||||||    
T  9737773 caaattgccccttatagggacaaaatggtaaattcaagggacatttcttttcttattagtatatagat 9737840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 28573828 - 28573917
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    |||||| ||||| |||||||||||||||||| |  |||||||||||||||||| |||| |||||||   ||| |||| ||||||||||||    
T  28573828 ctcaaccaatttgtaatttaccaaattgcccctcctaggggcaaaatggtaaaatcaaaggatattaacttttatatcagtatatagata 28573917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 4108041 - 4107953
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||| ||||| |||||||||||||||||| | ||||||| ||||||||||| |||| ||| |||   ||| |||| |||||||||||    
T  4108041 ctcaaccaatttgtaatttaccaaattgcccctcataggggaaaaatggtaaaatcaatggacattaacttttatattagtatatagat 4107953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 9981273 - 9981316
Alignment:
Q  48 aatttaccaaattgccctttataggggcaaaatggtaaattcaa 91  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  9981273 aatttaccaaattgccccttataggggtaaaatggtaaattcaa 9981316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 39276700 - 39276612
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39276700 ctcaacaaatttgtaatttaccaaattaccctttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatatagat 39276612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 21670792 - 21670879
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    |||||||||||| ||||||||||||||  |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  21670792 ctcaacaaatttgtaatttaccaaattatcctttataggggcaaaatagtaaattcaagggacatttcttttaatataagtatataga 21670879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 29467821 - 29467751
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29467821 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatataga 29467751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 17169099 - 17169026
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatata 119  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  17169099 ttaatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatata 17169026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 21600970 - 21601058
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||| ||||  |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  21600970 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttcttttaatagaagtatatagat 21601058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 11840447 - 11840534
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    |||||| ||||  |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  11840447 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttcttttaatagaagtatataga 11840534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 39651148 - 39651235
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    |||||| ||||  |||||||||||||||||| | |||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  39651148 ctcaaccaattagtaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 39651235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 9143563 - 9143472
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaaggga---tatttcttttaatataagtatatagat 122  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||| |||| |||||||||||    
T  9143563 ctcaacaaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggatattatttctttttatattagtatatagat 9143472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 48529945 - 48530021
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||||||||   |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  48529945 ttaatttaccaaattgcccccaataggggcaaaatggtaatttcaaaggacatttcttttaatataagtatatagat 48530021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 3791549 - 3791478
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||||||||||||||||||| ||  ||| ||||||||||||||||||||||||||    
T  3791549 ttaccaaattgccccttataggggcaaaatggtaaatccataggacatttcttttaatataagtatatagat 3791478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 688150 - 688062
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||| |||   ||| |||| |||||||||||    
T  688150 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaaggacattaacttttatattagtatatagat 688062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 27737741 - 27737829
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||| ||||  ||||||||||||||  |||||||||||| ||||||||||||||||||||  |||||||| ||| ||||||||||||    
T  27737741 ctcaaccaattagtaatttaccaaattatcctttataggggtaaaatggtaaattcaagggacttttctttttatagaagtatatagat 27737829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 44804590 - 44804520
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| |||||||||  ||| ||||||||||    
T  44804590 ttaccaaattgccccttatagggacaaaatggtaaattcaagggacatttcttttcttattagtatataga 44804520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 35157012 - 35157066
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttt 105  Q
    |||||||||||||| ||||||||||||||||||||||||||| || |||||||||    
T  35157012 ttaccaaattgccccttataggggcaaaatggtaaattcaagtgacatttctttt 35157066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 29684130 - 29684195
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtat 116  Q
    |||||||||||||| ||||||||| |||||||||||||||||| | ||||||||| |||| |||||    
T  29684130 ttaccaaattgccccttataggggtaaaatggtaaattcaaggcacatttctttttatattagtat 29684195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 49146122 - 49146211
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatt-tcttttaatataagtatatagat 122  Q
    |||||| ||||| |||||||||||||||||| | ||||||||||||||||||| |||| ||| |||  ||||| |||| |||||||||||    
T  49146122 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaactttttatattagtatatagat 49146211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 34872239 - 34872185
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttt 105  Q
    |||||||||||||| |||||||| ||||||||||| ||||| ||| |||||||||    
T  34872239 ttaccaaattgccccttatagggacaaaatggtaagttcaaaggacatttctttt 34872185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 4848436 - 4848347
Alignment:
Q  34 ctcaacaaatttt-taatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||| |||||| |||||||||||||| ||| | ||||||||||||||||||| |||| ||| |||   ||| |||| |||||||||||    
T  4848436 ctcaaccaattttgtaatttaccaaattacccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagat 4848347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 24684650 - 24684694
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    |||||||||||||| |||||| |||||||||||||||||| ||||    
T  24684650 ttaccaaattgccccttatagaggcaaaatggtaaattcatggga 24684694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 31899997 - 31900042
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaa 91  Q
    ||||| ||||||||||||| | ||||||||||||| ||||||||||    
T  31899997 ttaatctaccaaattgcccctaataggggcaaaattgtaaattcaa 31900042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 17364615 - 17364692
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17364615 ttaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggatatttcttttaatataagtatatagata 17364692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 33359775 - 33359698
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  33359775 ttaatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagata 33359698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 29188312 - 29188388
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  29188312 ttaatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 29188388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 33075673 - 33075743
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33075673 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatataga 33075743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 52306156 - 52306066
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagataa 124  Q
    |||||| ||||  ||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  52306156 ctcaaccaattagtaatttatcaaattgccccttataggggcaaaatggtaaattaaagggatatttctttttatataagtatatagataa 52306066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 1367366 - 1367290
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  1367366 ttaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 1367290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 22198924 - 22198995
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  22198924 ttaccaaattgccccttataggggcaaaatgataaattcaagggacatttcttttaatataagtatatagat 22198995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 4890173 - 4890097
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  4890173 ttaatttaccaaattgcccctaatagaggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 4890097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 16300476 - 16300388
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||| ||||  |||||||||||||||||| ||||||| |||||||||||||||||||||| |||  |||||||||||||||||||||    
T  16300476 ctcaaccaattagtaatttaccaaattgccccttataggagcaaaatggtaaattcaagggacattaattttaatataagtatatagat 16300388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 29844898 - 29844970
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    |||||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||||||||||||    
T  29844898 ttaccaaattgccccttataggggcaaaatggtaaatccatgggacatttcttttaatataagtatatagata 29844970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 47134791 - 47134702
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    |||||| ||||  |||||||||||||||||| |||||||||||||||||||||||||| ||| ||| | ||| |||||||||||||||||    
T  47134791 ctcaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacattaccttttatataagtatatagata 47134702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 1826863 - 1826792
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||| | ||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  1826863 ttaccaaattgccccttatagagccaaaatggtaaattcaagggacattacttttaatataagtatatagat 1826792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 19322362 - 19322434
Alignment:
Q  52 taccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagataa 124  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||  ||| |||||||||||||    
T  19322362 taccaaattgccccttataggggcaaaatggtaaattcaagggacatttattttcttattagtatatagataa 19322434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 46626341 - 46626409
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatata 119  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||  ||| ||||||||    
T  46626341 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttcttattagtatata 46626409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 42678440 - 42678374
Alignment:
Q  55 caaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    |||||||||| ||||||||  ||||||||||||||| |||| ||||||||| |||||||||||||||    
T  42678440 caaattgccccttatagggataaaatggtaaattcatgggacatttctttttatataagtatataga 42678374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 10766256 - 10766193
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagt 114  Q
    ||||||||||| || |||||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  10766256 ttaccaaattgacccttataggggcaaaatggtaaatccataggacatttcttttaatataagt 10766193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 38894825 - 38894754
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||||||||||||||||||||||| ||| ||||  |||  ||| |||||||||||    
T  38894825 ttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttactttcttattagtatatagat 38894754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 5426303 - 5426246
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaa 91  Q
    |||||| ||||| |||||||||||||||||| || || ||||||||||||||| ||||    
T  5426303 ctcaaccaatttgtaatttaccaaattgccccttctaagggcaaaatggtaaaatcaa 5426246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 10698125 - 10698206
Alignment:
Q  41 aatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||| ||||||||||||| ||||| || |||||||||||||||||||| |  ||| ||||||||| || | || ||||||||    
T  10698125 aattgttaatttaccaaaatgccccttctaggggcaaaatggtaaatttattggacatttctttttatgttagcatatagat 10698206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 28570795 - 28570751
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    ||||||||||| || ||||||||||||||||||||||||| ||||    
T  28570795 ttaccaaattgacccttataggggcaaaatggtaaattcatggga 28570751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 19400801 - 19400757
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    ||||| |||| ||| ||||| ||||||||||||||||||||||||    
T  19400801 ttaccgaattaccccttatatgggcaaaatggtaaattcaaggga 19400757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 225509 - 225433
Alignment:
Q  47 taatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  225509 taatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttcttttaatataagtatatagata 225433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 108617 - 108549
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatata 119  Q
    |||||||||| ||| |||| ||| ||||||||||||||||||||| |||||||||  ||| ||||||||    
T  108617 ttaccaaattaccccttatggggacaaaatggtaaattcaagggacatttcttttcttattagtatata 108549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 3088031 - 3088118
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    |||||| ||||  |||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  3088031 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattacttttaatataagtatataga 3088118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 30140589 - 30140501
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||| ||||  |||||||||||||| ||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  30140589 ctcaaccaattagtaatttaccaaattacccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 30140501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 41689350 - 41689274
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  41689350 ttaatttaccaaattgcccataataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 41689274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 25698729 - 25698804
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  25698729 ttaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 25698804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 33709813 - 33709900
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    |||||| ||||  |||||||||||||||||||||||||||| |||||||||||||||||||| |||  ||||||||||||||||||||    
T  33709813 ctcaaccaattactaatttaccaaattgccctttataggggtaaaatggtaaattcaagggacattaattttaatataagtatataga 33709900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 36886985 - 36887056
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||  ||| |||||||||||    
T  36886985 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttcttattagtatatagat 36887056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 12592485 - 12592556
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| ||||||||| ||| ||||||||||| |||| ||||||||| ||||||||||||||||    
T  12592485 ttaccaaattgccccttataggggtaaactggtaaattcatgggacatttctttttatataagtatatagat 12592556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 30754479 - 30754425
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttt 105  Q
    |||||||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  30754479 ttaccaaattgccccttataggggcaaaatggtaaattcaaaggacatttctttt 30754425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 17643402 - 17643474
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||| |||| ||||  ||| ||||||||||||    
T  17643402 ttaccaaattgccccttataagggcaaaatgataaattcaagggacatttattttcttattagtatatagata 17643474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 26602200 - 26602255
Alignment:
Q  66 ttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    ||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||||    
T  26602200 ttataagggtaaaatggtaaattcaagggacatttctttttatataagtatataga 26602255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 34715671 - 34715602
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    ||||||||||||||||||| | ||||||||||||||||||       ||| ||||||||||||||||||||||||||    
T  34715671 ttaatttaccaaattgcccctaataggggcaaaatggtaa-------ggacatttcttttaatataagtatatagat 34715602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 6305466 - 6305510
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||    
T  6305466 ttaccaaattgccccttataggggcaaaatggtaaattcatggga 6305510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 43138563 - 43138607
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||    
T  43138563 ttaccaaattgccccttataggggcaaaatggtaaattcatggga 43138607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 754461 - 754505
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    ||||||||||| || ||||||||||||||||||||||||| ||||    
T  754461 ttaccaaattgacccttataggggcaaaatggtaaattcatggga 754505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 12422361 - 12422401
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaa 91  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  12422361 ttaccaaattgccccttataggggcaaaatggtaaaatcaa 12422401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 42977849 - 42977883
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaa 85  Q
    |||||||||||||| ||||||||||||||||||||    
T  42977849 ttaccaaattgccccttataggggcaaaatggtaa 42977883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 20591 - 20668
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  20591 ttaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagata 20668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 28607308 - 28607219
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    |||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  28607308 ctcaaccaatttgtaatttaccaaattgccccttatagggacaaaatggtaaattcaatggacatttattttaatataagtatatagata 28607219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 17837037 - 17836969
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatata 119  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17837037 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatata 17836969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 4292794 - 4292869
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  4292794 ttaatttaccaaattgcccttaataggagcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 4292869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 32677200 - 32677271
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  32677200 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttattttaatataagtatatagat 32677271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 9545787 - 9545861
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatag 120  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  9545787 ttaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatag 9545861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 2952832 - 2952759
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatata 119  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  2952832 ttaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatata 2952759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 10050189 - 10050277
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||| ||||  ||||||| |||||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  10050189 ctcaaccaattagtaatttatcaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagat 10050277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 9920926 - 9920994
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatata 119  Q
    |||||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||||||||    
T  9920926 ttaccaaattgccccttataggggcaaaatggtaaatccatgggacatttcttttaatataagtatata 9920994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 24520953 - 24520864
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    |||||| ||||  |||||||||||||||| | |||||| ||||||||  ||||||||||||| ||||||||| |||||||||||||||||    
T  24520953 ctcaaccaattagtaatttaccaaattgctccttatagaggcaaaattataaattcaagggacatttctttttatataagtatatagata 24520864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 18096565 - 18096495
Alignment:
Q  47 taatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtata 117  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  18096565 taatttgccaaattaccccttataggggcaaaatggtaaattcaaaggacatttctttttatataagtata 18096495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 19486259 - 19486205
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttt 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  19486259 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttctttt 19486205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 10876588 - 10876659
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagataa 124  Q
    |||||||||||||| |||  ||||||||||||||||||||||||| |||||||||  ||| |||||||||||||    
T  10876588 ttaccaaattgcccctta--ggggcaaaatggtaaattcaagggacatttcttttcttattagtatatagataa 10876659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 19486128 - 19486204
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagta--tatagataag 125  Q
    |||||||||||||| |||||||||||||||| ||||||||| ||||||||  ||| |||||||||  ||||||||||    
T  19486128 ttaccaaattgccccttataggggcaaaatgataaattcaatggatattttcttttatataagtaattatagataag 19486204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 42781081 - 42781027
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttt 105  Q
    |||||||||||||| ||| |||| ||||||| ||||||||||||| |||||||||    
T  42781081 ttaccaaattgccccttacagggacaaaatgataaattcaagggacatttctttt 42781027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 8317 - 8383
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtata 117  Q
    |||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  8317 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacatttcttttaatataagtata 8383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 11955542 - 11955610
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatata 119  Q
    |||||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||||||||    
T  11955542 ttaccaaattgccccttataggggcaaaatggtaaatccatgggacatttcttttaatataagtatata 11955610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 22473714 - 22473642
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    |||||||||||||| |||||||||||||||||||||| || || | |||||||||||||||||||||||||||    
T  22473714 ttaccaaattgccccttataggggcaaaatggtaaatccatggaacatttcttttaatataagtatatagata 22473642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 8393650 - 8393560
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagataa 124  Q
    |||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||| |||   ||| |||| |||||||||||||    
T  8393650 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaaggacattaacttttatattagtatatagataa 8393560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 18682576 - 18682515
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    |||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18682576 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaggga 18682515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 22519276 - 22519188
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    |||||| ||||  |||||||| ||||||||| |||||||||||||||||||||||||| ||| | ||||||||||| |||||||||||||    
T  22519276 ctcaaccaattaataatttactaaattgccccttataggggcaaaatggtaaattcaatggaca-ttcttttaatagaagtatatagata 22519188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 19895645 - 19895732
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    |||||| ||||  |||||||||||||||||||||||| |||||||||||||||||||| ||| ||||  ||  |||||||||||||||    
T  19895645 ctcaaccaattactaatttaccaaattgccctttataagggcaaaatggtaaattcaatggacattttcttctatataagtatataga 19895732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 29530578 - 29530649
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| |||||||||  ||| |||||||||||    
T  29530578 ttaccaaattgccccttatagggacaaaatggtaaattcaagggacatttcttttcttattagtatatagat 29530649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 8528120 - 8528191
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||||| || |||||||||||||||||| |||||||||  ||| |||||||||||    
T  8528120 ttaccaaattgccccttatagggacagaatggtaaattcaagggacatttcttttcttattagtatatagat 8528191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 19368958 - 19369013
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttta 106  Q
    |||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||    
T  19368958 ttaccaaattgccccttataggggcaaaatggtaaaatcaagggacatttctttta 19369013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 55297343 - 55297414
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttt 105  Q
    |||||| ||||  |||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||    
T  55297343 ctcaaccaattaataatttaccaaattaccctttataggggtaaaatggtaaattcgagggacatttctttt 55297414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 35855274 - 35855220
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttt 105  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||    
T  35855274 ttaccaaattgccccttataggggcaaaatggtaaatttaagggacatttctttt 35855220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 28981834 - 28981878
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  28981834 ttaccaaattgccccttataggggcaaaatggtaaattcaaggga 28981878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 26777850 - 26777907
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaa 91  Q
    |||||| ||||| |||||||||||||||||| | ||||||||||||||||||| ||||    
T  26777850 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaa 26777907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 26102167 - 26102235
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatata 119  Q
    |||||||||| ||  |||||||||||||||||||||||||| ||| |||||||||  ||| ||||||||    
T  26102167 ttaccaaattacctcttataggggcaaaatggtaaattcaaaggacatttcttttcttattagtatata 26102235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 33872285 - 33872205
Alignment:
Q  41 aatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    |||| ||||||||||||| || || || ||||| ||||||||||||||||  ||| ||||||||| |||| ||||||||||    
T  33872285 aattattaatttaccaaaatggcccttctagggacaaaatggtaaattcatcggacatttctttttatattagtatataga 33872205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 4139354 - 4139435
Alignment:
Q  41 aatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    ||||| |||||||||||||||||| | |||||| |||||||||||| |||| ||| |||   ||| |||| |||||||||||    
T  4139354 aatttgtaatttaccaaattgcccctaatagggacaaaatggtaaaatcaatggacattaacttttatattagtatatagat 4139435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 9563300 - 9563228
Alignment:
Q  47 taatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatata 119  Q
    |||||||||||| |||||||| || ||||||||||||||||| ||  || || |||||| |||| ||||||||    
T  9563300 taatttaccaaaatgccctttctatgggcaaaatggtaaatttaatagacatctctttttatattagtatata 9563228  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 11602187 - 11602254
Alignment:
Q  57 aattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagataa 124  Q
    |||||||| ||||||||||||||||||||| |||| ||| ||   |||| |||| |||||||||||||    
T  11602187 aattgccccttataggggcaaaatggtaaaatcaacggacatggatttttatattagtatatagataa 11602254  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 53800586 - 53800529
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaa 91  Q
    |||||| ||||| |||||||||||||||||| |  || ||||||||||||||| ||||    
T  53800586 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggtaaaatcaa 53800529  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 40831943 - 40831987
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    ||||| ||||| || ||||||| ||||||||||||||||||||||    
T  40831943 ttaccgaattgtcccttataggagcaaaatggtaaattcaaggga 40831987  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 18378814 - 18378889
Alignment:
Q  46 ttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatataga 121  Q
    ||||||||||||||||||| | |||| ||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  18378814 ttaatttaccaaattgcccctaatagaggcaaaatgataaattcaaaggacatttcttttaatataagtatataga 18378889  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 36776474 - 36776403
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||  ||| |||||||||||    
T  36776474 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttcttattagtatatagat 36776403  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 24053984 - 24053912
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| |||||||||  ||| ||||||||||||    
T  24053984 ttaccaaattgccccttataggagcaaaatggtaaattcaagggacatttcttttcttattagtatatagata 24053912  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 41152721 - 41152666
Alignment:
Q  68 ataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    |||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  41152721 atagggacaaaatggtaaattcaagggacatttctttttatataagtatatagata 41152666  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 41973026 - 41972977
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatattt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  41973026 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacattt 41972977  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 25346104 - 25346050
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttt 105  Q
    |||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||    
T  25346104 ttaccaaattgccccttatagaggcaaaatggtaaattcaatggacatttctttt 25346050  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 40587709 - 40587763
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttt 105  Q
    |||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||    
T  40587709 ttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttatttt 40587763  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 8760771 - 8760727
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||    
T  8760771 ttaccaaattgccccttataggggcaaaatggtaaattcatggga 8760727  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 25836282 - 25836326
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||    
T  25836282 ttaccaaattgccccttataggggcaaaatggtaaattcatggga 25836326  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 9472221 - 9472168
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttt 105  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||| |||||||||    
T  9472221 ttaccaaattgccctt-atagaggcaaaatggtaatttcaagggacatttctttt 9472168  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 25620714 - 25620771
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaa 91  Q
    |||||| ||||| |||||||||||||||||| | ||||||||||||| ||||| ||||    
T  25620714 ctcaactaatttgtaatttaccaaattgcccctcataggggcaaaatagtaaaatcaa 25620771  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 45435060 - 45435019
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaag 92  Q
    |||||||||||||| ||||| |||||||||||||||||||||    
T  45435060 ttaccaaattgccccttataagggcaaaatggtaaattcaag 45435019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 1942859 - 1942815
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    |||||||||||||| |||||| |||||||||||||||||| ||||    
T  1942859 ttaccaaattgccccttatagaggcaaaatggtaaattcatggga 1942815  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 8162792 - 8162836
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    ||||||||||| || ||||||||||||||||||||||||| ||||    
T  8162792 ttaccaaattgacccttataggggcaaaatggtaaattcatggga 8162836  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 40616111 - 40616155
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||    
T  40616111 ttaccaaattgcctcttataggagcaaaatggtaaattcaaggga 40616155  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 41534248 - 41534319
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttctttt 105  Q
    |||||| ||||  ||||||| ||||||| || ||||||| ||||||||||||||||| |||| |||| ||||    
T  41534248 ctcaaccaattaataatttatcaaattgtcccttataggagcaaaatggtaaattcatgggacatttatttt 41534319  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 42245753 - 42245803
Alignment:
Q  55 caaattgccctttataggggcaaaatggtaaattcaagggatatttctttt 105  Q
    |||||| ||| |||||||||||||||||| |||||||| || |||||||||    
T  42245753 caaattaccccttataggggcaaaatggtgaattcaagtgacatttctttt 42245803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 7389285 - 7389228
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaa 91  Q
    |||||| ||||| |||||||||||||||||| |  | |||||||||||||||| ||||    
T  7389285 ctcaaccaatttgtaatttaccaaattgcccctccttggggcaaaatggtaaaatcaa 7389228  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 32844219 - 32844182
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaatt 88  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  32844219 ttaccaaattgccccttatcggggcaaaatggtaaatt 32844182  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 4466420 - 4466508
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||| ||||| |||||||||||||||||| |  || ||| ||||||||||| |||| ||| |||   ||| |||| |||||||||||    
T  4466420 ctcaaccaatttgtaatttaccaaattgcccctcctaagggtaaaatggtaaaatcaatggacattaacttttatattagtatatagat 4466508  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 44389022 - 44389066
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    |||||||||| ||| ||||| ||| ||||||||||||||||||||    
T  44389022 ttaccaaattaccccttataagggaaaaatggtaaattcaaggga 44389066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 5891 - 5979
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagat 122  Q
    |||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |||| |||   ||| |||| |||||||||||    
T  5891 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttttatattagtatatagat 5979  T

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Target: scaffold0069 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 11846 - 11771
Alignment:
Q  48 aatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    ||||||||||||||||| | |||  |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  11846 aatttaccaaattgcccctaataaaggcaaaatggtaaattcaaatgacatttcttttaatataagtatatagata 11771  T

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Target: scaffold0051 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 62149 - 62060
Alignment:
Q  34 ctcaacaaatttttaatttaccaaattgccctttataggggcaaaatggtaaattcaagggatatttcttttaatataagtatatagata 123  Q
    |||||| ||||| |||||||||||||||||| | ||||||||||||||||||| |||| ||| |||   ||| |||| ||||||||||||    
T  62149 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagata 62060  T

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Target: scaffold0381 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 9639 - 9595
Alignment:
Q  51 ttaccaaattgccctttataggggcaaaatggtaaattcaaggga 95  Q
    ||||||||||| || ||||||||||||||||||||||||| ||||    
T  9639 ttaccaaattgacccttataggggcaaaatggtaaattcatggga 9595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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