View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_60 (Length: 250)
Name: NF3482_low_60
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 10508353 - 10508106
Alignment:
| Q |
1 |
atatcataaaacaatggaaaacatattttaatttaccttgatctctaatgagttttgttttcgatatgaactctttgaattgaatgtattgaatttgaag |
100 |
Q |
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| T |
10508353 |
atatcataaaaaaatggaaaacatattttaatttaccttgatctctaatgagttttgttttcgatatgaactctttgaattgaatgtattgaatttgaag |
10508254 |
T |
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| Q |
101 |
agaaaatggactgagtattccattaggtagaatactttcagggatattgattgttgatcctgctgttgcgaagtttgcaccatatgtgaaattagaccca |
200 |
Q |
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| T |
10508253 |
agaaaatggactgagttttccattaggtagaatacttttagggatattgattgttgatcctcctgatgcgaagtttgcaccatgtgtgaagttagaccca |
10508154 |
T |
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| Q |
201 |
agagaattaagatatggacttagatagggaagtccaaagctctgtgct |
248 |
Q |
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| T |
10508153 |
agagaattaagatatggacttagatagggaagtcgaaagctccgtgct |
10508106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 10502625 - 10502400
Alignment:
| Q |
23 |
atattttaatttaccttgatctctaatgagttttgttttcgatatgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattcca |
122 |
Q |
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| T |
10502625 |
atattttaatttaccttgatcccgaatgagatttgttttggatatgaaatctttgaattgaatgtactgaatttgaagagaaaatggactaaatatccca |
10502526 |
T |
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| Q |
123 |
ttaggtagaatactttcagggatattgattgttgatcctgctgttgcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggactta |
222 |
Q |
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| T |
10502525 |
ttaggtataatactattagggatattgattgttgatcctcctgttgcgaagtttgcaccatgtgtgaagttagacccaagagaattaagatatggactta |
10502426 |
T |
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| Q |
223 |
gatagggaagtccaaagctctgtgct |
248 |
Q |
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| T |
10502425 |
gatagggaagtccaaagctctgtgct |
10502400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 10499680 - 10499460
Alignment:
| Q |
28 |
ttaatttaccttgatctctaatgagttttgttttcgatatgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattccattagg |
127 |
Q |
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|||||||||||||||| ||||||| ||||| ||| | |||||| ||||||||||||||| | ||||||||||| ||||||||||| | ||||||||||| |
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| T |
10499680 |
ttaatttaccttgatccctaatgaattttgcttttggtatgaaatctttgaattgaatggactgaatttgaagggaaaatggactaaacattccattagg |
10499581 |
T |
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| Q |
128 |
tagaatactttcagggatattgattgttgatcctgctgttgcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagatag |
227 |
Q |
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| T |
10499580 |
tataatactattaggaattttgattgttgaccctgctgttgcaaagtttgcaccatgtgtgaaatttgaccccagagaattaagatatggacttagatag |
10499481 |
T |
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| Q |
228 |
ggaagtccaaagctctgtgct |
248 |
Q |
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| T |
10499480 |
ggaagtccaaagctttgtgct |
10499460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 30 - 248
Target Start/End: Complemental strand, 10485300 - 10485082
Alignment:
| Q |
30 |
aatttaccttgatctctaatgagttttgttttcgatatgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattccattaggta |
129 |
Q |
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|||| ||||||||| ||||||| ||||||| | | |||||| ||| ||||||||||||| |||||| |||| |||||||||||| ||||||||||||| |
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| T |
10485300 |
aattgaccttgatccctaatgaattttgttctgggtatgaaatctctgaattgaatgtactgaattcgaaggtaaaatggactgaacattccattaggta |
10485201 |
T |
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| Q |
130 |
gaatactttcagggatattgattgttgatcctgctgttgcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagataggg |
229 |
Q |
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| T |
10485200 |
taatactattaggaattttgattgttgacgctgctgttgcaaagtttacaccatgtgtgaagttgggtccgagagaattaaggtatggactaagaaaggg |
10485101 |
T |
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| Q |
230 |
aagtccaaagctctgtgct |
248 |
Q |
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| T |
10485100 |
aagtccaaagctctgtgct |
10485082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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