View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3482_low_61 (Length: 250)
Name: NF3482_low_61
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_61 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 38370228 - 38369982
Alignment:
| Q |
11 |
cataggatggttcgtgattcggttactcaaatgaatataaaaagttacattccatttcagtttg-------ggatgaatttagggcatttaccaaatttg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38370228 |
cataggatggttcgtgattcggttactcaaatgactataaaaagttacattccatttcagtttgctgagtgggatgaatttagggcatttaccaaatttg |
38370129 |
T |
|
| Q |
104 |
cttcttttaatgaggctcaatctctttctagagataatgttgtcgctgatgtgatgaaagtttacttgcttgaaaaggataaattgaaaaaacagctggc |
203 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38370128 |
cttcttttaatgaggctcgatctctttctagagataatgttgtcgctgatgtgatgaaagtttacttgcttgaaaaggataaattgaaaaaacagctggc |
38370029 |
T |
|
| Q |
204 |
tgcagttaagggtggagtgtgtttgagctttcattgttggacttctt |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38370028 |
tgcagttaagggtggagtgtgtttgagctttcattgttggacttctt |
38369982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 38380121 - 38379875
Alignment:
| Q |
11 |
cataggatggttcgtgattcggttactcaaatgaatataaaaagttacattccatttcagtttg-------ggatgaatttagggcatttaccaaatttg |
103 |
Q |
| |
|
||||||||||||||||| || |||||||||||| |||||||| | | ||||||||| || || || ||||||||||| ||| || ||||||| |
|
|
| T |
38380121 |
cataggatggttcgtgaatcaattactcaaatgactataaaaaatcatcttccatttcggtctgttgagtggggtgaatttagggaattcactaaatttg |
38380022 |
T |
|
| Q |
104 |
cttcttttaatgaggctcaatctctttctagagataatgttgtcgctgatgtgatgaaagtttacttgcttgaaaaggataaattgaaaaaacagctggc |
203 |
Q |
| |
|
||| || ||||||||||||| |||||||||| || ||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| || |
|
|
| T |
38380021 |
tttcgttcaatgaggctcaatttctttctagatatggtgttgctaatgatgtgatgaaagtttacttgcttgaaaaagagaaattgaaaaaacagcttgc |
38379922 |
T |
|
| Q |
204 |
tgcagttaagggtggagtgtgtttgagctttcattgttggacttctt |
250 |
Q |
| |
|
|||| || |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38379921 |
tgcaattgagggtggagtgtgtttgagctttcgttgttggacttctt |
38379875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 250
Target Start/End: Complemental strand, 38374888 - 38374711
Alignment:
| Q |
73 |
tgggatgaatttagggcatttaccaaatttgcttcttttaatgaggctcaatctctttctagagataatgttgtcgctgatgtgatgaaagtttacttgc |
172 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| |||| |||||||||||||| ||| || ||| || | ||| | ||||||||||||||||||||||| |
|
|
| T |
38374888 |
tgggataaatttagggcattcaccaaatttgtttctgataatgaggctcaatttctatccagatatggtcttgctgatgatgtgatgaaagtttacttgc |
38374789 |
T |
|
| Q |
173 |
ttgaaaaggataaattgaaaaaacagctggctgcagttaagggtggagtgtgtttgagctttcattgttggacttctt |
250 |
Q |
| |
|
|| |||| |||||| ||||||||||||| |||| | | | ||| || |||||||||| |||| |||||||||||||| |
|
|
| T |
38374788 |
ttcaaaaagataaactgaaaaaacagctagctggaatagaaggtagaatgtgtttgagttttcgttgttggacttctt |
38374711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University