View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_62 (Length: 248)
Name: NF3482_low_62
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 45270082 - 45270295
Alignment:
| Q |
20 |
tatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaa |
119 |
Q |
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| T |
45270082 |
tatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaa |
45270181 |
T |
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| Q |
120 |
agtaacacgtgttttcataatgtttttctggcttgtttggttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccat |
219 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45270182 |
agtaacacgtgttttcatgatgtttttctggcttgttttgttcttctggccaagtggtccatccatcttgatgaataaaatcaccaattgtggattccat |
45270281 |
T |
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| Q |
220 |
gatgactgcctttg |
233 |
Q |
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|||||||||||||| |
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| T |
45270282 |
gatgactgcctttg |
45270295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 45273633 - 45273744
Alignment:
| Q |
21 |
atttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaa |
120 |
Q |
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||||| |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |
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| T |
45273633 |
atttgttagcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgtttgcatactctgcata |
45273732 |
T |
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| Q |
121 |
gtaacacgtgtt |
132 |
Q |
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|||||| ||||| |
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| T |
45273733 |
gtaacatgtgtt |
45273744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 45281877 - 45281988
Alignment:
| Q |
21 |
atttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaa |
120 |
Q |
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||||| |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |
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| T |
45281877 |
atttgttagcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgtttgcatactctgcata |
45281976 |
T |
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| Q |
121 |
gtaacacgtgtt |
132 |
Q |
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|||||| ||||| |
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| T |
45281977 |
gtaacatgtgtt |
45281988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 45293217 - 45293339
Alignment:
| Q |
21 |
atttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaa |
120 |
Q |
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|||||||||||||| |||||||||| |||| | ||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||| | |
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| T |
45293217 |
atttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctggcaatattggcaccaggtccagtgttggcgtactctgcata |
45293316 |
T |
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| Q |
121 |
gtaacacgtgttttcataatgtt |
143 |
Q |
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|||||| ||||||||| |||||| |
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| T |
45293317 |
gtaacatgtgttttcaaaatgtt |
45293339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 45302177 - 45302299
Alignment:
| Q |
21 |
atttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaa |
120 |
Q |
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|||||||||||||| |||||||||| |||| | ||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||| | |
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| T |
45302177 |
atttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctggcaatattggcaccaggtccagtgttggcgtactctgcata |
45302276 |
T |
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| Q |
121 |
gtaacacgtgttttcataatgtt |
143 |
Q |
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|||||| ||||||||| |||||| |
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| T |
45302277 |
gtaacatgtgttttcaaaatgtt |
45302299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 45273753 - 45273829
Alignment:
| Q |
159 |
gttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgcctttgct |
235 |
Q |
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| T |
45273753 |
gttctccttgccaaatggtccatccatctggatgaatgaaatcaccaatggtggattccatgacgacagtctttgct |
45273829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 45281997 - 45282073
Alignment:
| Q |
159 |
gttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgcctttgct |
235 |
Q |
| |
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| T |
45281997 |
gttctccttgccaaatggtccatccatctggatgaatgaaatcaccaatggtggattccatgacgacagtctttgct |
45282073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 45293346 - 45293413
Alignment:
| Q |
168 |
gccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgcctttgct |
235 |
Q |
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|||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| | ||||||| |
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| T |
45293346 |
gccaaggggtccatccatctggatgaataaaatcaccaatggtggattccatgacgaccgtctttgct |
45293413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 45302306 - 45302373
Alignment:
| Q |
168 |
gccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgcctttgct |
235 |
Q |
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|||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| | ||||||| |
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| T |
45302306 |
gccaaggggtccatccatctggatgaataaaatcaccaatggtggattccatgacgaccgtctttgct |
45302373 |
T |
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