View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3482_low_64 (Length: 247)
Name: NF3482_low_64
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_64 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 26530912 - 26530683
Alignment:
| Q |
1 |
aaagaagaagaaactcaaatcttcatcttcttcctccattccaagattagaatcacccgggtttttctcaaatctcacatatcaaaaatcaatatttttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
26530912 |
aaagaagaagaaactcaaatcttcatcttcttcctccattccaagattagaatcacccgggtttttctcaaatctcacatctcaaaaaccaatatttttc |
26530813 |
T |
|
| Q |
101 |
atttttcttagatttcaaccaacaaactaaagattggtgtagaaatctttgaaaatgatttctttctctggacttcacaacagaaaaggaaatcaataaa |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
26530812 |
atttttcttagatttcacccaacaaactaaatattggtgtagaaatcttcaaaaatgttttctttctctggacttttcaacagaaaagg-aatcaataaa |
26530714 |
T |
|
| Q |
201 |
caccaacaacataaacaccacaatcacatac |
231 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
26530713 |
caccaacaacacaaacaccacaatcacatac |
26530683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 36575360 - 36575156
Alignment:
| Q |
1 |
aaagaagaagaaactcaaatcttcatcttcttcctccattccaagattagaatcacccgggtttttctcaaatctcacatatcaaaaatcaatatttttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
36575360 |
aaagaagaagaaactcaaatcttcatcttcttcctccattccaagattagaatcacacggatttttctcaaatctcacatctcaaaaatcaatatttttc |
36575261 |
T |
|
| Q |
101 |
atttttcttagatttcaaccaacaaactaaagattggtgtagaaatctttgaaaatgatttctttctctggacttcacaacagaaaaggaaatcaataaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| ||||||||||||||||||| |
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| T |
36575260 |
atttttctaagatttcaaccaacaaactaaagattggtgtagaaatcttcaaaaatattttctttcattggacttcgcaatagaaaaggaaatcaataaa |
36575161 |
T |
|
| Q |
201 |
cacca |
205 |
Q |
| |
|
||||| |
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|
| T |
36575160 |
cacca |
36575156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 36666441 - 36666676
Alignment:
| Q |
1 |
aaagaagaagaaactcaaatcttcatcttcttcctccattc----caagattagaatcacccgggtttttctcaaatctcacatatcaaaaatcaatatt |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36666441 |
aaagaagaagaaactcaaatcttcatcttcttccttcattcattccaagattagaatcacccgggtttttctcaaatctcacatctcaaaaatcaatatt |
36666540 |
T |
|
| Q |
97 |
tt-tcatttttcttagatttcaaccaacaaactaaagattggtgtagaaatctttgaaaatgatttctttctctggacttcacaacagaaaaggaaatca |
195 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||||| |
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|
| T |
36666541 |
ttttcatttttcttagatttcacccaacaaactaaagattggtgtagaaatcttcgaaaatgttttctttctctggactttacaacataaaaggaaatca |
36666640 |
T |
|
| Q |
196 |
ataaacaccaacaacataaacaccacaatcacatac |
231 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36666641 |
ataaacaccaacaacacaaacaccacaatcacatac |
36666676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 3 - 203
Target Start/End: Original strand, 31620765 - 31620965
Alignment:
| Q |
3 |
agaagaagaaactcaaatcttcatcttcttcctccattccaagattagaatcacccgggtttttctcaaatctcacatatcaaaaatcaatatttttcat |
102 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
31620765 |
agaagaaaaaactcaaatcttcatcttcttcctccattccaagattagaatcacccggatttttctcaaatctcacatctcaaaaatcaatatttttcat |
31620864 |
T |
|
| Q |
103 |
ttttcttagatttcaaccaacaaactaaagattggtgtagaaatctttgaaaatgatttctttctctggacttcacaacagaaaaggaaatcaataaaca |
202 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
31620865 |
ttttcttagttttcaaccaacaaaccaaagattggtgtagaaatctttgaaaatgttttctttctctggacttcacaacagaaaaagaaatcaataaaca |
31620964 |
T |
|
| Q |
203 |
c |
203 |
Q |
| |
|
| |
|
|
| T |
31620965 |
c |
31620965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 11138313 - 11138470
Alignment:
| Q |
62 |
tttttctcaaatctcacatatcaaaaatcaatatttttcatttttcttagatttcaaccaacaaactaaagattggtgtagaaatctttgaaaatg-att |
160 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||| | || |
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|
| T |
11138313 |
tttttctcaaatctcacatctcaaaaaccaatatttatcatttttcttagatttcacccaacaaactaaagattggtttagaagtcttcgaaaaggtttt |
11138412 |
T |
|
| Q |
161 |
tctttctctggacttcacaacagaaaaggaaatcaataaacaccaacaacataaacac |
218 |
Q |
| |
|
||||||||| | || ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11138413 |
tctttctctaaaatttacaacagaaaaggaaatcaataaacaccaacaacacaaacac |
11138470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 11138149 - 11138205
Alignment:
| Q |
1 |
aaagaagaagaaactcaaatcttcatcttcttcctccattccaagattagaatcacc |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
11138149 |
aaagaagaagaaactcaaatcttcatcttcttcctcaattccaagattataatcacc |
11138205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 62 - 231
Target Start/End: Original strand, 12887427 - 12887591
Alignment:
| Q |
62 |
tttttctcaaatctcacatatcaaaaatcaatatttttcatttttcttagatttcaaccaacaaactaaagattggtgtagaaatctttgaaaatgattt |
161 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||| ||| |
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|
| T |
12887427 |
tttttctcaaatctcacatctcaaaaaccaatatttttcatttttcttagatttcacccaacaaactaaag----gtgtagag-tcttcgaaaatgtttt |
12887521 |
T |
|
| Q |
162 |
ctttctctggacttcacaacagaaaaggaaatcaataaacaccaacaacataaacaccacaatcacatac |
231 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||||||||| | || |||||| |||||||||||| |
|
|
| T |
12887522 |
ctttctctggaatttacaacagaaaagaaaatcaataaacaccaatagcacaaacacaacaatcacatac |
12887591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12887263 - 12887327
Alignment:
| Q |
1 |
aaagaagaagaaactcaaatcttcatcttcttcctccattccaagattagaatcacccgggtttt |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
12887263 |
aaagaagaagaaactcaaatcttcatcttcttcctccattctaagattagaatcacctgggtttt |
12887327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23543896 - 23543841
Alignment:
| Q |
1 |
aaagaagaagaaactcaaatcttcatcttcttcctccattccaagattagaatcacc |
57 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
23543896 |
aaagaagaagaaacccaa-tcttcatcttcttcctccattcccagataagaatcacc |
23543841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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