View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_68 (Length: 239)
Name: NF3482_low_68
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_68 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 32345387 - 32345610
Alignment:
| Q |
1 |
caaaatgagaattgtatttatagagaaaaactatgtctattagtcaaacgacgtagcctatagtgttaaacctctactcaactaattttgtcggtagtgc |
100 |
Q |
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| T |
32345387 |
caaaatgagaattgtatttatagagaaaaactacgtctattagtcaaacaatgtagcctatagtgttaaacctttactcaactaatttcatcggtagtgc |
32345486 |
T |
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| Q |
101 |
gtcagtttccctttttgagaggatcgtggcagcccacattcgtatatgaatttactcctccataacatgattcgttgacacaatctttggtgaacagctc |
200 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
32345487 |
gtctgtttccctttttgaaaggatcgtggcagcccacattcgtatatgaatttactcctccatagcatgattcgttgacgcaatctttggtgaacagctc |
32345586 |
T |
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| Q |
201 |
taacatgaacttgtgtcttccttc |
224 |
Q |
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||||||||||||||||||||||| |
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| T |
32345587 |
caacatgaacttgtgtcttccttc |
32345610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 25051204 - 25051119
Alignment:
| Q |
45 |
caaacgacgtagcctatagtgttaaacctctactcaactaattttgtcggtagtgcgtcagtttccctttttgagaggatcgtggc |
130 |
Q |
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|||||||| | ||||| | ||||||||||| || | |||||||| |||||||||| |||||||||||||||| |||| ||||| |
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| T |
25051204 |
caaacgacattgcctacaatgttaaacctccgcttgattaattttgcgggtagtgcgttagtttccctttttgaggggattgtggc |
25051119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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