View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_70 (Length: 237)
Name: NF3482_low_70
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_70 |
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Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 26143076 - 26142965
Alignment:
| Q |
17 |
aattgcatctttgaagtttaaaatttataaaagagacttaatagcttaaaataatttaattgcaaattacagatttttaatttaaagacaaattatagac |
116 |
Q |
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| T |
26143076 |
aattgcatctttgaagtttaaaatttataaaagagacttaatagcttaaaagaatttaattgcaaattacagttttttaatttaaagacaaattatagac |
26142977 |
T |
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| Q |
117 |
aagctcaaaagt |
128 |
Q |
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| T |
26142976 |
aagctcaaaagt |
26142965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 26142621 - 26142515
Alignment:
| Q |
129 |
gtcattagcgttaacttagagtgcccttcgctcggtaataccattgcgccctaaagaataattctccatcaactgactcgaacatctctaattttacaaa |
228 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26142621 |
gtcattagcgttaacttacagtgtccttcgctcggtaataccattgcgccctaaagaataattctccatcaactgactcgaacatctctaattttacaaa |
26142522 |
T |
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| Q |
229 |
tataatt |
235 |
Q |
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||||||| |
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| T |
26142521 |
tataatt |
26142515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 31490840 - 31490743
Alignment:
| Q |
138 |
gttaacttagagtgcccttcgctcggtaataccattgcgccctaaagaataattctccatcaactgactcgaacatctc--taattttacaaatataa |
233 |
Q |
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| T |
31490840 |
gttaacttatagtgtccttagctcggtattgccattgcgccctaaagaacaattctccatcaactgacttgaacatctctataattttacaaatataa |
31490743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 31490730 - 31490643
Alignment:
| Q |
148 |
agtgcccttcgctcggtaataccattgcgccctaaagaataattctccatcaactgactcgaacatctc--taattttacaaatataa |
233 |
Q |
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|||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
31490730 |
agtgtccttagctcggtaatagcattgcgccctaaagaacaattctccatcaactgattcgaacatctctataattttacaaatataa |
31490643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 31492415 - 31492458
Alignment:
| Q |
17 |
aattgcatctttgaagtttaaaatttataaaagagacttaatag |
60 |
Q |
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||||||||| ||| |||||||||||||||||||||||| ||||| |
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| T |
31492415 |
aattgcatcgttggagtttaaaatttataaaagagactcaatag |
31492458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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