View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3482_low_71 (Length: 237)

Name: NF3482_low_71
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3482_low_71
NF3482_low_71
[»] chr8 (3 HSPs)
chr8 (1-223)||(38369618-38369841)
chr8 (4-226)||(38374345-38374567)
chr8 (1-225)||(38379510-38379734)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38369841 - 38369618
Alignment:
Q  1 ttgcaggaatggggaatagagagaaatgttttttctattactatggataatgtttcagctaatgatgaaacctcgcaaaacttgaaaaatcaactttgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38369841 ttgcaggaatggggaatagagagaaatgttttttctattactatggataatgtttcagctaatgatgaaacctcgcaaaacttgaaaaatcaactttgct 38369742  T
Q  101 cgcttgatagtttgttgagaactttcatcacatcggcaacagcaccatctctagaaaaacattttaagtgttgtgctcgtgtcttggaccttatggttg- 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38369741 cgcttgatagtttgttgagaactttcatcacatcggcaacagcaccatctctagaaaaacattttaagtgttgtgctcgtgtcttggaccttatggttga 38369642  T
Q  200 aagagagtttaaaggtagtaagtg 223  Q
    ||||||||||||||||||||||||    
T  38369641 aagagagtttaaaggtagtaagtg 38369618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 38374567 - 38374345
Alignment:
Q  4 caggaatggggaatagagagaaatgttttttctattactatggataatgtttcagctaatgatgaaacctcgcaaaacttgaaaaatcaactttgctcgc 103  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||  | ||| |||||||||||| |||||||||||||||    
T  38374567 caggaatggggaatagagaaaaatattttttctattactatggataatgcttcagctaatgatggcaactcacaaaacttgaaagatcaactttgctcgc 38374468  T
Q  104 ttgatagtttgttgagaactttcatcacatcggcaacagcaccatctctagaaaaacattttaagtgttgtgctcgtgtcttggaccttatggttgaaga 203  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||    
T  38374467 ttgatagtttgttgagaactttcatcacatcagcaacagcaccatctctagaaaaacattttaagtgttgtgctcatgtcttggatcttatggttcaaga 38374368  T
Q  204 gagtttaaaggtagtaagtgatg 226  Q
    |||||||||||||||||||||||    
T  38374367 gagtttaaaggtagtaagtgatg 38374345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38379734 - 38379510
Alignment:
Q  1 ttgcaggaatggggaatagagagaaatgttttttctattactatggataatgtttcagctaatgatgaaacctcgcaaaacttgaaaaatcaactttgct 100  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| | ||  |||||| ||||||||||||||||||    
T  38379734 ttgcaggaatggggaatagagagaaatattttttctatcactatggataatgcttcagctaatgatgacaacttacaaaacgtgaaaaatcaactttgct 38379635  T
Q  101 cgcttgatagtttgttgagaactttcatcacatcggcaacagcaccatctctagaaaaacattttaagtgttgtgctcgtgtcttggaccttatggttga 200  Q
    ||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||| |    
T  38379634 cgcttgataatttgttgagaactttcatcacatcaacaacagcaccatctctagaaaaacatttcaagtgttgtgctcatatcttggatcttatggttca 38379535  T
Q  201 agagagtttaaaggtagtaagtgat 225  Q
    ||||||||| |||||||||||||||    
T  38379534 agagagtttgaaggtagtaagtgat 38379510  T

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