View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3482_low_73 (Length: 236)

Name: NF3482_low_73
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3482_low_73
NF3482_low_73
[»] chr6 (4 HSPs)
chr6 (123-219)||(32589568-32589664)
chr6 (123-219)||(32600016-32600112)
chr6 (1-89)||(32589801-32589895)
chr6 (1-89)||(32600249-32600343)
[»] chr1 (2 HSPs)
chr1 (1-71)||(34577588-34577658)
chr1 (163-219)||(34577317-34577373)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 32589664 - 32589568
Alignment:
Q  123 gttcttgcatacaacttcttgctaaaaattatatggatataggtatgggcaggtcctctcaataataacaaagtagcagtggtcttatggaatagaa 219  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||    
T  32589664 gttcttgcatacaacttcttgctaaaaattctatggagataggtatgggcaggtcctctcactaataacaaagtagcagtgattttatggaatagaa 32589568  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 32600112 - 32600016
Alignment:
Q  123 gttcttgcatacaacttcttgctaaaaattatatggatataggtatgggcaggtcctctcaataataacaaagtagcagtggtcttatggaatagaa 219  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||    
T  32600112 gttcttgcatacaacttcttgctaaaaattctatggagataggtatgggcaggtcctctcactaataacaaagtagcagtgattttatggaatagaa 32600016  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 32589895 - 32589801
Alignment:
Q  1 aaacttggagttcagggaaagaaagtcaaaagcaacaatgatttagaggtgacattattatctttccc------ttttatggtgtttaagtttga 89  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||      |||||||||||||||||||||    
T  32589895 aaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggtgacattattttctttccctttatattttatggtgtttaagtttga 32589801  T

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Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 32600343 - 32600249
Alignment:
Q  1 aaacttggagttcagggaaagaaagtcaaaagcaacaatgatttagaggtgacattattatctttccc------ttttatggtgtttaagtttga 89  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||      |||||||||||||||||||||    
T  32600343 aaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggtgacattattttctttccctttatattttatggtgtttaagtttga 32600249  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34577658 - 34577588
Alignment:
Q  1 aaacttggagttcagggaaagaaagtcaaaagcaacaatgatttagaggtgacattattatctttcccttt 71  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||||    
T  34577658 aaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggtgatattattttcttttccttt 34577588  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 34577373 - 34577317
Alignment:
Q  163 aggtatgggcaggtcctctcaataataacaaagtagcagtggtcttatggaatagaa 219  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||||||    
T  34577373 aggtatgggcaggtccccttagtaaaaacaaagtagcagtggtcttatggaatagaa 34577317  T

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