View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3482_low_8 (Length: 599)
Name: NF3482_low_8
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_8 |
 | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
| [»] scaffold0642 (2 HSPs) |
| | |
|
| [»] scaffold0345 (2 HSPs) |
| | |
|
| [»] scaffold0105 (2 HSPs) |
| | |
|
| [»] scaffold1526 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0016 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 243 - 586
Target Start/End: Complemental strand, 50993 - 50650
Alignment:
| Q |
243 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50993 |
aaaaaagatctgaaatgcatccaccgcaaagattcctaaaatgccatggatcatgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
50894 |
T |
|
| Q |
343 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
442 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50893 |
ttatgtcgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
50794 |
T |
|
| Q |
443 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
542 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50793 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
50694 |
T |
|
| Q |
543 |
gaatcttggatttgatattactttagagtaaaccatgtgaatct |
586 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50693 |
gaatcttggatttaatattactttagagtaaaccatgtgaatct |
50650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 39 - 173
Target Start/End: Complemental strand, 53857 - 53719
Alignment:
| Q |
39 |
acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaa----acaatcatgaccgaacacggc |
134 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53857 |
acccatccatgaattcactccagagcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaaacaatcatgaccgaacacggc |
53758 |
T |
|
| Q |
135 |
aaactcaaattctactccggccaccctcctccgccgtcg |
173 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
53757 |
aaactcaaatcctactccggccaccctcctccgccgtcg |
53719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 243 - 586
Target Start/End: Original strand, 44498575 - 44498918
Alignment:
| Q |
243 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44498575 |
aaaaaagatctgaaatgcatccaccgcaaagattcctaaaatgccatggatcatgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
44498674 |
T |
|
| Q |
343 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
442 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498675 |
ttatgtcgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
44498774 |
T |
|
| Q |
443 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
542 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498775 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
44498874 |
T |
|
| Q |
543 |
gaatcttggatttgatattactttagagtaaaccatgtgaatct |
586 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44498875 |
gaatcttggatttaatattactttagagtaaaccatgtgaatct |
44498918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 44495548 - 44495791
Alignment:
| Q |
1 |
cacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaac |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44495548 |
cacactccattcatacccatgaacaaacaatcagttaaactcatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaac |
44495647 |
T |
|
| Q |
101 |
ttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44495648 |
ttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctattccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtac |
44495747 |
T |
|
| Q |
201 |
gagtctttccatggcatttccaatttcccatctcttcaccctaa |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44495748 |
gagtctttccatggcatttccaatttcccacctcttcaccctaa |
44495791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 243 - 589
Target Start/End: Original strand, 6958 - 7291
Alignment:
| Q |
243 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6958 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
7057 |
T |
|
| Q |
343 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
442 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7058 |
ttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
7157 |
T |
|
| Q |
443 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
542 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7158 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgg-------------aagtatgttttgtttttaagctt |
7244 |
T |
|
| Q |
543 |
gaatcttggatttgatattactttagagtaaaccatgtgaatctgtg |
589 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7245 |
gaatcttggatttgatattactttagtgtaaaccatgtgaatctgtg |
7291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4146 - 4389
Alignment:
| Q |
1 |
cacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4146 |
cacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaac |
4245 |
T |
|
| Q |
101 |
ttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4246 |
ttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgttgcaatcctttcaacctccttagtac |
4345 |
T |
|
| Q |
201 |
gagtctttccatggcatttccaatttcccatctcttcaccctaa |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4346 |
gagtctttccatggcatttccaatttcccacctcttcaccctaa |
4389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 243 - 589
Target Start/End: Original strand, 16871 - 17204
Alignment:
| Q |
243 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16871 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
16970 |
T |
|
| Q |
343 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
442 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16971 |
ttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
17070 |
T |
|
| Q |
443 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
542 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17071 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgg-------------aagtatgttttgtttttaagctt |
17157 |
T |
|
| Q |
543 |
gaatcttggatttgatattactttagagtaaaccatgtgaatctgtg |
589 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17158 |
gaatcttggatttgatattactttagtgtaaaccatgtgaatctgtg |
17204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14058 - 14301
Alignment:
| Q |
1 |
cacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14058 |
cacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaac |
14157 |
T |
|
| Q |
101 |
ttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14158 |
ttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgttgcaatcctttcaacctccttagtac |
14257 |
T |
|
| Q |
201 |
gagtctttccatggcatttccaatttcccatctcttcaccctaa |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14258 |
gagtctttccatggcatttccaatttcccacctcttcaccctaa |
14301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 243 - 589
Target Start/End: Complemental strand, 22111 - 21778
Alignment:
| Q |
243 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22111 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
22012 |
T |
|
| Q |
343 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
442 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22011 |
ttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
21912 |
T |
|
| Q |
443 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
542 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21911 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgg-------------aagtatgttttgtttttaagctt |
21825 |
T |
|
| Q |
543 |
gaatcttggatttgatattactttagagtaaaccatgtgaatctgtg |
589 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21824 |
gaatcttggatttgatattactttagtgtaaaccatgtgaatctgtg |
21778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 24923 - 24680
Alignment:
| Q |
1 |
cacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24923 |
cacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaac |
24824 |
T |
|
| Q |
101 |
ttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24823 |
ttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgttgcaatcctttcaacctccttagtac |
24724 |
T |
|
| Q |
201 |
gagtctttccatggcatttccaatttcccatctcttcaccctaa |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24723 |
gagtctttccatggcatttccaatttcccacctcttcaccctaa |
24680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 243 - 589
Target Start/End: Original strand, 3381177 - 3381510
Alignment:
| Q |
243 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
342 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381177 |
aaaaaagatctgaaatgcatccacctc---gagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
3381273 |
T |
|
| Q |
343 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381274 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttg----------agttaaaattttccatttatggagttgtcatattttgt |
3381363 |
T |
|
| Q |
443 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
542 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3381364 |
atgaaatatgtaagggctgggttaactattttagatacaaatttgtatttgcaccttttgctggattggctttaactaagtatgttttgtttttaagctt |
3381463 |
T |
|
| Q |
543 |
gaatcttggatttgatattactttagagtaaaccatgtgaatctgtg |
589 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381464 |
gaatcttggatttgatattactttagagtaaaccatgtgaatctgtg |
3381510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 3378283 - 3378519
Alignment:
| Q |
6 |
tctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttcca |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3378283 |
tctattcatacacatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttcca |
3378382 |
T |
|
| Q |
106 |
ccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtc |
205 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3378383 |
ccaaacaaacaatcatgaccgaacaatcc--tttcaaatcctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtc |
3378480 |
T |
|
| Q |
206 |
tttccatggcatttccaatttcccatctcttcaccctaa |
244 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3378481 |
tttccatggcatttccaatttcccacctcttcaccctaa |
3378519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 30355844 - 30355936
Alignment:
| Q |
90 |
taacccccaacttccaccaa-acaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatc |
181 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||| ||| |||||||||| |
|
|
| T |
30355844 |
taacccccaactcccaccaacacaaacaatcatgaccgaacacgacaaacccaaatcctcctccggccaccctcctcagccaccgtcgcaatc |
30355936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 1250 - 1012
Alignment:
| Q |
6 |
tctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttcca |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1250 |
tctattcatacacatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttcca |
1151 |
T |
|
| Q |
106 |
ccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1150 |
ccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtc |
1051 |
T |
|
| Q |
206 |
tttccatggcatttccaatttcccatctcttcaccctaa |
244 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1050 |
tttccatggcatttccaatttcccacctcttcaccctaa |
1012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 15707402 - 15707615
Alignment:
| Q |
1 |
cacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15707402 |
cacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaac |
15707501 |
T |
|
| Q |
101 |
ttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15707502 |
ttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctctttagtac |
15707601 |
T |
|
| Q |
201 |
gagtctttccatgg |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15707602 |
gagtctttccatgg |
15707615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 471 - 548
Target Start/End: Complemental strand, 9200166 - 9200091
Alignment:
| Q |
471 |
ttttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagcttgaatct |
548 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9200166 |
ttttggatccaaatttgtatt-gcaacttttt-tggattggctttagttaagtatgttttgtttttaagcttgaatct |
9200091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 548
Target Start/End: Complemental strand, 9201928 - 9201854
Alignment:
| Q |
471 |
ttttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagcttgaatct |
548 |
Q |
| |
|
|||||||| |||||||||||| ||| |||| ||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
9201928 |
ttttggatccaaatttgtatt-gcaattttt--tggattggctttagttaagtaggttttgtttttaagcttgaatct |
9201854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 2303461 - 2303543
Alignment:
| Q |
257 |
atgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatat |
339 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||| ||||||||||||||||| || | ||||||| ||||| ||||| |
|
|
| T |
2303461 |
atgcatccactactaagagtcctaaaatgccatttatcaagattgaagattcaaagtgattatggagcatgatttggcaatat |
2303543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 28336340 - 28336295
Alignment:
| Q |
56 |
ctccagatcggtgagtggcttcgttcttccctcctaacccccaact |
101 |
Q |
| |
|
|||||||| ||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
28336340 |
ctccagattggttagtggtttcgttcatccctcctaacccccaact |
28336295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 9e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 353 - 518
Target Start/End: Complemental strand, 30112048 - 30111884
Alignment:
| Q |
353 |
atgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatg |
452 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| ||||||| ||||| |||||||||||||||| | |||||||||||||||||||| ||| |
|
|
| T |
30112048 |
atgtctttagtgaaatcattttggctatctaatgttttgttcaccctttcgtagttgaaattttccatttatg-atttgtcatattttgtgtgaataatg |
30111950 |
T |
|
| Q |
453 |
taagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaat |
518 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
30111949 |
taagggctgagttaactattttggatacaaatttgtatttgtaacttttgctggattggctttaat |
30111884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 528 - 584
Target Start/End: Complemental strand, 30110775 - 30110718
Alignment:
| Q |
528 |
tttgtttttaagcttgaatcttggatttgatatt-actttagagtaaaccatgtgaat |
584 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30110775 |
tttgtttttaagcttatatcttggatttgatattcactttagagtaaaccatgtgaat |
30110718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 30112131 - 30112059
Alignment:
| Q |
243 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaa |
315 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
30112131 |
aaaaaagatctaaaatgcatccactccaaagagttctaaaatgtcatgcatcaagattgaagattcaaagtaa |
30112059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 17850613 - 17850502
Alignment:
| Q |
69 |
agtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgc |
168 |
Q |
| |
|
|||||||| |||| |||||| ||||||| | ||| ||| |||||||| |||||| |||||||| ||||||||||| || |||||| ||||| ||| ||| |
|
|
| T |
17850613 |
agtggctttgttcatccctcataacccc-agcttgcactaaacaaaccatcatgcccgaacacaacaaactcaaatcctcctccggacacccaccttcgc |
17850515 |
T |
|
| Q |
169 |
cgtcgtcgcaatc |
181 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
17850514 |
cgatgtcgcaatc |
17850502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 36933078 - 36933042
Alignment:
| Q |
83 |
tccctcctaacccccaacttccaccaaacaaacaatc |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36933078 |
tccctcctaacccccaacttccaccgaacaaacaatc |
36933042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 36933038 - 36932949
Alignment:
| Q |
134 |
caaactcaaattctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttccca |
230 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||| || ||||||| |||||| |||||||||||||||| |||| ||||| |
|
|
| T |
36933038 |
caaactcaaattctactccggcc-------tccgccgtcgttccaatccctttcacctcctctgtacgactctttccatggcattttcaatctccca |
36932949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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