View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3482_low_84 (Length: 212)
Name: NF3482_low_84
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3482_low_84 |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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| [»] scaffold1526 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 15707220 - 15707402
Alignment:
| Q |
20 |
aatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactatatatctcttggaatgtctat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15707220 |
aatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaatactatatatctcttggaatgtctat |
15707319 |
T |
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| Q |
120 |
ccatcttaaaaaacattgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcttctctc |
202 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15707320 |
ccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcttctctc |
15707402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 3964 - 4146
Alignment:
| Q |
20 |
aatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactatatatctcttggaatgtctat |
119 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3964 |
aatatcatatcctttcgattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactatatatctcttcgaatgtctat |
4063 |
T |
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| Q |
120 |
ccatcttaaaaaacattgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcttctctc |
202 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4064 |
ccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggttcttcttctctc |
4146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 13876 - 14058
Alignment:
| Q |
20 |
aatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactatatatctcttggaatgtctat |
119 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13876 |
aatatcatatcctttcgattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactatatatctcttcgaatgtctat |
13975 |
T |
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| Q |
120 |
ccatcttaaaaaacattgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcttctctc |
202 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13976 |
ccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggttcttcttctctc |
14058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 25105 - 24923
Alignment:
| Q |
20 |
aatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactatatatctcttggaatgtctat |
119 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25105 |
aatatcatatcctttcgattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactatatatctcttcgaatgtctat |
25006 |
T |
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| Q |
120 |
ccatcttaaaaaacattgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcttctctc |
202 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25005 |
ccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggttcttcttctctc |
24923 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 44495367 - 44495548
Alignment:
| Q |
20 |
aatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactatatatctcttggaatgtctat |
119 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
44495367 |
aatatcatatcctttcaattacctcttt-aactacaaacaattttcaaactaaccaatcaacatccatcgctaacactgtatatctcttcaaatgtctat |
44495465 |
T |
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| Q |
120 |
ccatcttaaaaaacattgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcttctctc |
202 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44495466 |
ccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggttcttcttctctc |
44495548 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 1360 - 1260
Alignment:
| Q |
102 |
atctcttggaatgtctatccatcttaaaaaacattgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcttctct |
201 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1360 |
atctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcttctct |
1261 |
T |
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| Q |
202 |
c |
202 |
Q |
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| T |
1260 |
c |
1260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 3378173 - 3378273
Alignment:
| Q |
102 |
atctcttggaatgtctatccatcttaaaaaacattgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcttctct |
201 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3378173 |
atctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcttctct |
3378272 |
T |
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| Q |
202 |
c |
202 |
Q |
| |
|
| |
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|
| T |
3378273 |
c |
3378273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 3377277 - 3377356
Alignment:
| Q |
20 |
aatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactat |
99 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3377277 |
aatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatccatcgctaacactat |
3377356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 53915 - 53871
Alignment:
| Q |
158 |
cttactttctctctaacatcattccaatccggtccttcttctctc |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53915 |
cttactttctctctaacatcattccaatccggtccttcttctctc |
53871 |
T |
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