View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3482_low_9 (Length: 588)

Name: NF3482_low_9
Description: NF3482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3482_low_9
NF3482_low_9
[»] chr6 (3 HSPs)
chr6 (372-561)||(33943731-33943924)
chr6 (16-195)||(33943351-33943531)
chr6 (179-270)||(33943545-33943636)
[»] chr8 (2 HSPs)
chr8 (20-72)||(1096576-1096628)
chr8 (22-72)||(38750445-38750495)
[»] chr5 (1 HSPs)
chr5 (40-72)||(34907721-34907753)
[»] chr3 (4 HSPs)
chr3 (24-63)||(11592027-11592066)
chr3 (40-72)||(9832687-9832719)
chr3 (20-72)||(25447177-25447229)
chr3 (47-75)||(40294795-40294823)
[»] chr2 (1 HSPs)
chr2 (40-90)||(13119486-13119536)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 372 - 561
Target Start/End: Original strand, 33943731 - 33943924
Alignment:
Q  372 tagtaatttaaatattgtggtaactactaaagtgttgtgaccaacgtgagttgaatatagtagaatgactaaacttctccaatgtgacgaaatatttgaa 471  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||    
T  33943731 tagtaatttaaatattctggtaactactaaagtgttatgaccaacgtgagttgaatatagtagaatgactaaacttctacaatgtgacaaaatatttaaa 33943830  T
Q  472 tctg----aacgaattatcaacacgtatatatgatatctgacacaatttaaattaatttaacttttctttttgggtttggatgatatagatata 561  Q
    | ||    || || ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| |||||||||| |||||    
T  33943831 tttgaccaaatgagttatcaacacgtatatatgatatctaagacactttaaattaatttaacttttctttttaggttaggatgatatatatata 33943924  T

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Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 33943351 - 33943531
Alignment:
Q  16 tcaaatgttctttcaaataatcttacaaaacttatgtcaataaataaactcaaataaatc-tattcaaatagatcctataagtcttaaagacaacttatc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||||| ||||||| ||||||||||||||||||    
T  33943351 tcaaatgttctttcaaataatcttacaaaacttatgtcaataaataaacttaaataagtcatatt-aaatagaccctataaatcttaaagacaacttatc 33943449  T
Q  115 aaaatatttatatttatctatattcaaagatact-actagactccaacccagaacttcaatattaaaaatctatctttttac 195  Q
    |||||||||| |||||| | | |||||||||||| ||||||||||||| || ||||||||||||||| ||||||||||||||    
T  33943450 aaaatatttacatttatttctcttcaaagatactaactagactccaactcataacttcaatattaaatatctatctttttac 33943531  T

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Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 33943545 - 33943636
Alignment:
Q  179 aaaatctatctttttaccattgaactaaactcttctatatttaaatccaatttagctggctccactataagttattcaatatatgtcatagc 270  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33943545 aaaatctatctttttaccattaaactaaactattctatatttaaatccaatttagctggctccactataagttattcaatatatgtcatagc 33943636  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 1096576 - 1096628
Alignment:
Q  20 atgttctttcaaataatcttacaaaacttatgtcaataaataaactcaaataa 72  Q
    |||||||  |||| ||||| ||||||||||||||| |||||||||||||||||    
T  1096576 atgttctcccaaaaaatctcacaaaacttatgtcactaaataaactcaaataa 1096628  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 38750445 - 38750495
Alignment:
Q  22 gttctttcaaataatcttacaaaacttatgtcaataaataaactcaaataa 72  Q
    ||||||||||||||||| ||||||||||||  | || ||||||||||||||    
T  38750445 gttctttcaaataatctcacaaaacttatgcaagtagataaactcaaataa 38750495  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 34907753 - 34907721
Alignment:
Q  40 acaaaacttatgtcaataaataaactcaaataa 72  Q
    |||||||||||||||||||||||||||||||||    
T  34907753 acaaaacttatgtcaataaataaactcaaataa 34907721  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 11592027 - 11592066
Alignment:
Q  24 tctttcaaataatcttacaaaacttatgtcaataaataaa 63  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  11592027 tcttttaaatagtcttacaaaacttatgtcaataaataaa 11592066  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 9832719 - 9832687
Alignment:
Q  40 acaaaacttatgtcaataaataaactcaaataa 72  Q
    ||||||||||||||||||||||| |||||||||    
T  9832719 acaaaacttatgtcaataaataagctcaaataa 9832687  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 25447229 - 25447177
Alignment:
Q  20 atgttctttcaaataatcttacaaaacttatgtcaataaataaactcaaataa 72  Q
    |||||||| |||| | ||| ||||||||||||||| || ||||||||||||||    
T  25447229 atgttcttgcaaacagtctcacaaaacttatgtcagtagataaactcaaataa 25447177  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 40294795 - 40294823
Alignment:
Q  47 ttatgtcaataaataaactcaaataaatc 75  Q
    |||||||||||||||||||||||||||||    
T  40294795 ttatgtcaataaataaactcaaataaatc 40294823  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 13119536 - 13119486
Alignment:
Q  40 acaaaacttatgtcaataaataaactcaaataaatctattcaaatagatcc 90  Q
    |||||| |||| |||||||||||||||||||||||| | ||||||| ||||    
T  13119536 acaaaaattatatcaataaataaactcaaataaatcaaatcaaataaatcc 13119486  T

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