View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3483_high_1 (Length: 661)
Name: NF3483_high_1
Description: NF3483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3483_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 23 - 347
Target Start/End: Complemental strand, 19644114 - 19643777
Alignment:
| Q |
23 |
tgttttacatttttcaatacccttattaaaaatctcgggaacactgtacattgaggaaagctgctggatttcttcagcat--taatccaacaatatataa |
120 |
Q |
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| T |
19644114 |
tgttttacatttttcaatacccttattaaaaatctcgggaacactgtacattgagaaaagctgctggatttcttcagcatattaatccaacaatctataa |
19644015 |
T |
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| Q |
121 |
tcaagactgaggaaataacaac-----------ttgaatcccgtaaaaggaccacaaaagatggcgacatgcgcagacaaacaatgcttcaaaaagcgtg |
209 |
Q |
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| T |
19644014 |
tcaagactggggaaataacaaccacaatctttcttgaatcccgtaaaaggaccacaaaagatggccacatgcgcagacaaacaatgcttcaaaaagcgtg |
19643915 |
T |
|
| Q |
210 |
actcctaagcacgatcatcatcgatgattccactaggatcctttgaacgacgaaaccatgatatcgactttaggacgcatgttagtgtgactatcaaaat |
309 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |
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| T |
19643914 |
actcataagcacgatcatcatcgatgattccactaggatccttcgaacgacgaaaccatgataccgactttaggacatatgttagcatgactatcaaaat |
19643815 |
T |
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| Q |
310 |
taaactcttgtaaaatatgtagtaggtgatactaattc |
347 |
Q |
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| T |
19643814 |
taaactcttgtaaaatatgtagtaggtgatactaattc |
19643777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 455 - 564
Target Start/End: Complemental strand, 19643662 - 19643556
Alignment:
| Q |
455 |
tgaaaagtaaaaattgcttgtaaacatgaggtgagtagtgtttaaaggcatgaatcaccaccaaccaaagttaaccatttgtcatacttttcaacattct |
554 |
Q |
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| T |
19643662 |
tgaaaagtaaaaattgcttgtcaacatgaggtgagtagtgtttaaaggcatgaatc---accaaccaaagttaaccatttgtcatacttttcaacattat |
19643566 |
T |
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| Q |
555 |
cttttattat |
564 |
Q |
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|||||||||| |
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| T |
19643565 |
cttttattat |
19643556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 367 - 458
Target Start/End: Complemental strand, 19643791 - 19643701
Alignment:
| Q |
367 |
aggtgatactaattcttgaaaaatacttcctccatcacatttataaataaatattcnnnnnnnaaattcaataaataattgatatatttgaa |
458 |
Q |
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| T |
19643791 |
aggtgatactaattcttgaaaaatacttcctagatcacatttataaacaaatattctttttttaaattcaa-aaataattgataaatttgaa |
19643701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 610 - 661
Target Start/End: Complemental strand, 19643529 - 19643478
Alignment:
| Q |
610 |
ttttgtaacaactttttctcttactcaaattgtccttaactttctctcttac |
661 |
Q |
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| T |
19643529 |
ttttgtaacaactttttctcttaatcacattgtccttaactttctctcttac |
19643478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 19643492 - 19643450
Alignment:
| Q |
619 |
aactttttctcttactcaaattgtccttaactttctctcttac |
661 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
19643492 |
aactttctctcttactcacattgtccttaactttctctcttac |
19643450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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