View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3483_high_2 (Length: 462)
Name: NF3483_high_2
Description: NF3483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3483_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 26 - 378
Target Start/End: Complemental strand, 5110800 - 5110452
Alignment:
| Q |
26 |
tagcaagaatgagcttttataatatttcttagaaacacatttaaaataagcttcacatgtatcagcnnnnnnnnnnnnnngcttcgcatccgaccaagga |
125 |
Q |
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| T |
5110800 |
tagcaaaaatgagctttaataatatttcttagaaacacatttaaaataagcttcacatgtatcagcaaaaaaataaaaaagcttcgcatccgaccaagga |
5110701 |
T |
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| Q |
126 |
gcagaaataaaaagggttgtggtgactgattttctccacaatgagatcataagaaacaaatgaataaacttcatatgaagtgttcaccatggtttgaaaa |
225 |
Q |
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| T |
5110700 |
gcagaaataaaaagggttgtggtgactgattttctccacaatgagatcataagaaacaaatgaataaacttcatatgaagtgttcaccatggtttgaaaa |
5110601 |
T |
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| Q |
226 |
attctttaccccatggatatgggtggaaatagaccatctcaagaattagagatgacaatcaactagcttctcannnnnnnnnnnaagaaactaaaaaact |
325 |
Q |
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| T |
5110600 |
attctttaccccatggatatgggtggaaataggtcatctcaagaattagagatgacaatgaactagcttc----aattttttttaagaaactaaaaaact |
5110505 |
T |
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| Q |
326 |
tctaaaaattaataaactaatttaagtgagtgggatagattcaacttttactt |
378 |
Q |
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| T |
5110504 |
tctaaaaattaataaactaatttaagtgagtgggatagattcaacttttactt |
5110452 |
T |
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