View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3483_low_4 (Length: 408)
Name: NF3483_low_4
Description: NF3483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3483_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 42759809 - 42759628
Alignment:
| Q |
18 |
tatccatctgtaatcctctttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtttgcattttactca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42759809 |
tatccatctgtaatcctctttttcccatgcatattaacacaatcatgcactttattccctctgtatatatatacatgcctgactgtttgcattttactca |
42759710 |
T |
|
| Q |
118 |
tctgtttctaaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagttaatttgatggtc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42759709 |
tctgtttctaaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagttaatttgatggtc |
42759628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 300 - 398
Target Start/End: Complemental strand, 42759531 - 42759433
Alignment:
| Q |
300 |
aagtttgccaaatctattttgttccagactatttctgtttaatataagtatccaatttcatttcaattccatttatatttttccctaagtaattctctg |
398 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42759531 |
aagtttgccaaatctattttgttcaagactatttctgtttaatttaagtatctagtttcatttcaattccatttatatttttccctaagtaattctctg |
42759433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 1402039 - 1402208
Alignment:
| Q |
18 |
tatccatctgtaatcctctttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtttgcattttactca |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
1402039 |
tatccatatgtaatcctctttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatacacatgcctgactgtttccgttttactca |
1402138 |
T |
|
| Q |
118 |
tctgtttctaaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagtt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1402139 |
tctgtttctaaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagtt |
1402208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 303 - 398
Target Start/End: Original strand, 1402306 - 1402400
Alignment:
| Q |
303 |
tttgccaaatctattttgttccagactatttctgtttaatataagtatccaatttcatttcaattccatttatatttttccctaagtaattctctg |
398 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1402306 |
tttgccaaatctattttgttcaagactatatctgtttaat-taagtatccagtttcatttcaattccatttatattttgccctaagtaattctctg |
1402400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University