View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3483_low_5 (Length: 363)
Name: NF3483_low_5
Description: NF3483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3483_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 33717923 - 33717576
Alignment:
| Q |
1 |
atcacttttgtaactttttattattagaaatatgtcaatatatcgttatataaa-cacagagctcatcatatatacaagttttttccttgtaacatattc |
99 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33717923 |
atcacttttgtaactttttattattaaaaatatgtcaatacatcgttatataaaacacagagctcatcatatatacaagttttttccttgtaacatattc |
33717824 |
T |
|
| Q |
100 |
taaaactggtaaatatatgtttcaagaaaaagtactatatgatgaatttgattaatcactatcattatattcattacattaaacac--agagtacatcaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33717823 |
taaaactggtaaatatatgtttcaagaaaaagtactctatgatgaatttgattaatcactatcattatattcattacattaaacacatagagtacatcaa |
33717724 |
T |
|
| Q |
198 |
ataagcaagtttttcaacgtgtcatcttttataacttcgccatcaactcctcaaattcatatttcaacccacaaatagtaatggatccacacacaatgta |
297 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
33717723 |
ataagcaagtttttccacgtgtcatcttttataacttccccatcaactcctcaaattcatatttcaacccacaaatagtaatggatc--cacaaaatgta |
33717626 |
T |
|
| Q |
298 |
aacaaattataaaatgtaactaacatagactatttcaaagaatttacaca |
347 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33717625 |
aacaaattataaaatgtaactaacatagactatttcaaagaatttacaca |
33717576 |
T |
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