View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3483_low_7 (Length: 291)

Name: NF3483_low_7
Description: NF3483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3483_low_7
NF3483_low_7
[»] chr1 (3 HSPs)
chr1 (1-274)||(43638157-43638425)
chr1 (5-123)||(26127295-26127414)
chr1 (1-97)||(14171845-14171942)
[»] chr6 (2 HSPs)
chr6 (1-122)||(31330550-31330672)
chr6 (1-32)||(30533716-30533747)
[»] chr5 (2 HSPs)
chr5 (5-122)||(932149-932266)
chr5 (4-32)||(19336835-19336863)
[»] chr3 (1 HSPs)
chr3 (5-124)||(40892828-40892948)
[»] chr2 (2 HSPs)
chr2 (5-95)||(8329685-8329776)
chr2 (5-95)||(25749704-25749795)
[»] chr8 (1 HSPs)
chr8 (1-31)||(18087247-18087277)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-29)||(185503-185531)
[»] chr4 (1 HSPs)
chr4 (9-77)||(12763383-12763452)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 43638425 - 43638157
Alignment:
Q  1 ttgaaaattgtgtattctactttttgaaagttnnnnnnn-tgttattttcaatgtaaaacttgaatttctttctacttgtagtcgcttaactagtgtctc 99  Q
    ||||||||||||||||||||||||||||| |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43638425 ttgaaaattgtgtattctactttttgaaaatcaaaaaaaatgttattttcaatgtaaaacttgaatttctttctacttgtagtcgcttaactagtgtctc 43638326  T
Q  100 agggacaccggttaacaagacccaagttaattataatatatttaccggttattacttctcaagttaacgaacacaataataacaaatagaaaaaattaag 199  Q
    |      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43638325 a------ccggttaacaagacccaagttaattataatatatttaccggttattacttctcaagttaatgaacacaataataacaaatagaaaaaattaag 43638232  T
Q  200 agcaaatctggaatcgggcatagaaatacagttccaatgctgaatatgattatcccaaaaaatggtgagaaatct 274  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43638231 agcaaacctggaatcgggcatagaaatacagttccaatgctgaatatgattatcccaaaaaatggtgagaaatct 43638157  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 26127295 - 26127414
Alignment:
Q  5 aaattgtgtattctactttttgaaagttnnnnnnntgttattttcaatgtaaaacttga-atttctttctacttgtagtcgcttaactagtgtctcaggg 103  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||| ||||  ||||||||||||| ||||  ||||||||||| | | |||    
T  26127295 aaattgtgtattctactttttgaaagttaaaaaagtgttattttcaatgtaaaatttgacttttctttctacttttagttccttaactagtgccccgggg 26127394  T
Q  104 acaccggttaacaagaccca 123  Q
     ||| |||||||||||||||    
T  26127395 gcactggttaacaagaccca 26127414  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14171845 - 14171942
Alignment:
Q  1 ttgaaaattgtgtattctactttttgaaagttnnnnnnntgttattttcaatgtaaaacttga-atttctttctacttgtagtcgcttaactagtgtc 97  Q
    |||||||||||||||| |||||||||||||||       |||| ||||||||| ||||||| |  ||||||||||||| ||||  |||||| ||||||    
T  14171845 ttgaaaattgtgtattttactttttgaaagttaaaaaaatgtttttttcaatgcaaaacttcacttttctttctacttttagttccttaacgagtgtc 14171942  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 31330550 - 31330672
Alignment:
Q  1 ttgaaaattgtgtattctactttttgaaagttnnnnnnntgttattttcaatgtaaaacttga-atttctttctacttgtagtcgcttaactagtgtctc 99  Q
    ||||||||||||||||||||||||||||||||       |||| |||| ||| ||||||||||  |||||||||| || ||||  ||||||||||| | |    
T  31330550 ttgaaaattgtgtattctactttttgaaagttaaaaaagtgttctttttaatataaaacttgacttttctttctatttttagttccttaactagtgcccc 31330649  T
Q  100 agggacaccggttaacaagaccc 122  Q
    || ||||| ||||||||||||||    
T  31330650 agagacactggttaacaagaccc 31330672  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 30533747 - 30533716
Alignment:
Q  1 ttgaaaattgtgtattctactttttgaaagtt 32  Q
    ||||||||||||||||||||||||||||||||    
T  30533747 ttgaaaattgtgtattctactttttgaaagtt 30533716  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 932149 - 932266
Alignment:
Q  5 aaattgtgtattctactttttgaaagttnnnnnnntgttattttcaatgtaaaacttgaatttctttctacttgtagtcgcttaactagtgtctcaggga 104  Q
    |||||||||||| |||||||| ||||||       |||| ||||||||| ||||||||| ||| ||||||||| ||||  ||||||||||||| |||       
T  932149 aaattgtgtattttacttttttaaagttaaaaaaatgttcttttcaatgcaaaacttgattttttttctacttttagttccttaactagtgtcccagaag 932248  T
Q  105 caccggttaacaagaccc 122  Q
    |||||||| |||||||||    
T  932249 caccggttgacaagaccc 932266  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 19336863 - 19336835
Alignment:
Q  4 aaaattgtgtattctactttttgaaagtt 32  Q
    |||||||||||||||||||||||||||||    
T  19336863 aaaattgtgtattctactttttgaaagtt 19336835  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 40892828 - 40892948
Alignment:
Q  5 aaattgtgtattctactttttgaaagttnnnnnnntgttattttcaatgtaaaacttgaattt-ctttctacttgtagtcgcttaactagtgtctcaggg 103  Q
    ||||||||||||||||||||||||||||       |||| ||||||||| ||||||||| ||| |||||||||| ||||  |||||||| || | | | |    
T  40892828 aaattgtgtattctactttttgaaagttaataaagtgttcttttcaatgcaaaacttgactttcctttctacttttagttccttaactaatgccccggag 40892927  T
Q  104 acaccggttaacaagacccaa 124  Q
     ||| ||||||||||||||||    
T  40892928 gcactggttaacaagacccaa 40892948  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 8329685 - 8329776
Alignment:
Q  5 aaattgtgtattctactttttgaaagttnnnnnnntgttattttcaatgtaaaacttgaa-tttctttctacttgtagtcgcttaactagtg 95  Q
    ||||| ||||||||||||||||||||||       |||| |||| |||| |||||||||| ||||||||||||| ||||  |||||||||||    
T  8329685 aaattatgtattctactttttgaaagttaaaatggtgttctttttaatgcaaaacttgaattttctttctacttttagttccttaactagtg 8329776  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 25749704 - 25749795
Alignment:
Q  5 aaattgtgtattctactttttgaaagttnnnnnnntgttattttcaatgtaaaacttga-atttctttctacttgtagtcgcttaactagtg 95  Q
    ||||||||||||||| ||||||||||||       |||| ||||||||| ||||||| |  ||||||||||||||||||  |||||||||||    
T  25749704 aaattgtgtattctattttttgaaagttaaaaaagtgttcttttcaatgcaaaactttacttttctttctacttgtagttccttaactagtg 25749795  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 18087277 - 18087247
Alignment:
Q  1 ttgaaaattgtgtattctactttttgaaagt 31  Q
    |||||||||||||||||||||||||||||||    
T  18087277 ttgaaaattgtgtattctactttttgaaagt 18087247  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 185531 - 185503
Alignment:
Q  1 ttgaaaattgtgtattctactttttgaaa 29  Q
    |||||||||||||||||||||||||||||    
T  185531 ttgaaaattgtgtattctactttttgaaa 185503  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 12763452 - 12763383
Alignment:
Q  9 tgtgtattctactttttgaaagttnnnnnnntgttattttcaatgtaaaacttga-atttctttctactt 77  Q
    ||||||||||||||||||||||||       |||||||||||||| |||| ||||  |||||||||||||    
T  12763452 tgtgtattctactttttgaaagttaagaaagtgttattttcaatgcaaaatttgatttttctttctactt 12763383  T

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