View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3484_high_15 (Length: 227)
Name: NF3484_high_15
Description: NF3484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3484_high_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 2090662 - 2090442
Alignment:
| Q |
7 |
aaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatgtgtgtc |
106 |
Q |
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| T |
2090662 |
aaggaagcctaaatccttattcaaccatctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatgtgtgtc |
2090563 |
T |
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| Q |
107 |
tcgcactcatggcgtaatcgcattctaatcacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttcccctcacccattttatg |
206 |
Q |
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| T |
2090562 |
tcgcactcatggcgtaatcgcatcctaaccacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttcccctcacccattttatg |
2090463 |
T |
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| Q |
207 |
gcctagaacaattttttaatt |
227 |
Q |
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| T |
2090462 |
gcctacaacaattttttaatt |
2090442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 2727373 - 2727332
Alignment:
| Q |
79 |
gaaggatcaatcaaaggctatgtgtgtctcgcactcatggcg |
120 |
Q |
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| T |
2727373 |
gaaggatcaatcaaaagctatgtgtgtctcacactcatggcg |
2727332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 2878674 - 2878809
Alignment:
| Q |
6 |
aaaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatgtgtgt |
105 |
Q |
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| T |
2878674 |
aaaggaagcccagatccttcttcaacaatctccccataaatattcaaacgaaaatattttgtaggttgtcgttggaggatcaatcaaaagctatgtgtgt |
2878773 |
T |
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| Q |
106 |
ctcgcactcatggcgtaatcgcattctaatcacaac |
141 |
Q |
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| T |
2878774 |
ctcgaatgaatggcgtaatcacgttctaaacacaac |
2878809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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