View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3484_high_2 (Length: 473)
Name: NF3484_high_2
Description: NF3484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3484_high_2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 42 - 457
Target Start/End: Complemental strand, 39695340 - 39694925
Alignment:
| Q |
42 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaa |
141 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695340 |
tcaacacatgtcctgctcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaa |
39695241 |
T |
|
| Q |
142 |
aatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaacc |
241 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39695240 |
aatgggtgctgatatcaagactataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaacc |
39695141 |
T |
|
| Q |
242 |
aagctactttggattgctattggagttgctaagaatatacttgaagaccacaatggtaggattccaattannnnnnngaaatcatccacttgttgaactg |
341 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
39695140 |
aagcaactttggattgctattggagttgctaagaatatacttgaagaccacaatggtaggattccaattatttttttgaaatcatccacttgttgaactg |
39695041 |
T |
|
| Q |
342 |
tgcatagtctccatgatgattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttgcatataga |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39695040 |
tgcatagtctccatgatgattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttgcatataga |
39694941 |
T |
|
| Q |
442 |
tcagcacattgttaat |
457 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
39694940 |
tcagcacattgttaat |
39694925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 42 - 442
Target Start/End: Complemental strand, 39704252 - 39703852
Alignment:
| Q |
42 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaa |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| |||| | |||| ||||||||||| ||| |||||||||||||||||||| |||||||| |
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|
| T |
39704252 |
tcaacacatgtcctactcctattcgttgaagtggcataggcgtttttccagtaatcttatgccaacatggcaatagcactctgtcaagaaaggtgaggaa |
39704153 |
T |
|
| Q |
142 |
aatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaacc |
241 |
Q |
| |
|
||||| || |||||||| ||| |||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||| | |
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|
| T |
39704152 |
aatggatgttgatattatgactataacagaaacagaaccagctggaattttgaaatggggtcctaatgagcgatccatggctaaagcttgaagtaccgtc |
39704053 |
T |
|
| Q |
242 |
aagctactttggattgctattggagttgctaagaatatacttgaagaccacaatggtaggattccaattannnnnnngaaatcatccacttgttgaactg |
341 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| || |||||| |||||||||||||||| |
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|
| T |
39704052 |
acactactttggattgctattggagttgctaagaatatacttgaactccatagtggtaggattccaaatatctttttgaaatcttccacttgttgaactg |
39703953 |
T |
|
| Q |
342 |
tgcatagtctccatgatgattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttgcatataga |
441 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
39703952 |
tgcatagtttccatgatgatttcttaattgagccatctgattttaggtctgcatcagttatcagagttgcgcgattgaagaacctgcatttgcatataga |
39703853 |
T |
|
| Q |
442 |
t |
442 |
Q |
| |
|
| |
|
|
| T |
39703852 |
t |
39703852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 34 - 450
Target Start/End: Original strand, 39929115 - 39929531
Alignment:
| Q |
34 |
aagaatattcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaat |
133 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| | |||||| || |||| ||| ||||||||||||||||||| ||| |||||||| ||||||||||| |
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|
| T |
39929115 |
aagaacattgaacacatgtcctactcctatttgatggagcagcttaggagattttctggtaaccttatgccaacttggcaatagcaccctgtcaagaaaa |
39929214 |
T |
|
| Q |
134 |
gtgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaa |
233 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
39929215 |
gtgaggaaaatgggtgctgatattaagactataacagaaatagaaccagctgggatttcaaaatggtatcctaaagaacgatccatgactaaagcttgaa |
39929314 |
T |
|
| Q |
234 |
gtacaaccaagctactttggattgctattggagttgctaagaatatacttgaagaccacaatggtaggattccaattannnnnnngaaatcatccacttg |
333 |
Q |
| |
|
||| || ||| |||| ||| |||||||| ||| || ||||| |||||||| ||| ||||||| ||||||| || |||||| |||||||| |
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|
| T |
39929315 |
gtataatgaagtccatttgcattactattggaattgataggaatagacttgaagtccataatggtaatattccaactatttttttgaaatcttccacttg |
39929414 |
T |
|
| Q |
334 |
ttgaactgtgcatagtctccatgatgattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttg |
433 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| || ||||| ||| | ||||||||||||||||||||||| || || ||||| |||||||||||| |
|
|
| T |
39929415 |
ttgaattgtgcatagtctccatgatgatttcttaattgtgccatttgagtgtaggtctgcatcagttattagagcggcacggttgaaaaacctgcatttg |
39929514 |
T |
|
| Q |
434 |
catatagatcagcacat |
450 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
39929515 |
catatcgatcagcacat |
39929531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 42 - 291
Target Start/End: Original strand, 39934775 - 39935024
Alignment:
| Q |
42 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaa |
141 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||| | ||| | ||||| ||||||||||| ||| || ||||| ||||||||||| ||||| || |
|
|
| T |
39934775 |
tcaacacatgtcctgctcctattcgctggagcggcataagtgatttgccggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgagaaa |
39934874 |
T |
|
| Q |
142 |
aatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaacc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
39934875 |
aatgggtgctgatattaagacaataacagaaacaaaactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaacc |
39934974 |
T |
|
| Q |
242 |
aagctactttggattgctattggagttgctaagaatatacttgaagacca |
291 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
39934975 |
aagctactttggattgctattggagttgataggaatatacttgaagacca |
39935024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 42 - 429
Target Start/End: Original strand, 38061800 - 38062191
Alignment:
| Q |
42 |
tcaacacatgtcctactcctattcgttggagcggcataggcattttcct-ggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgagga |
140 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||| | ||| | | ||| ||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
38061800 |
tcaacacatagcctactcctattcgttggagcggcataggcttttttttcggttatcgtattccaacctggcaataacactctgtcaagaaaggtgagga |
38061899 |
T |
|
| Q |
141 |
aaatgggtgctgatattaagac---aataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtac |
237 |
Q |
| |
|
|||| | || ||||||||| || ||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||| |||| |||||||||| |
|
|
| T |
38061900 |
aaatagatgttgatattaacactataataacagaaacagaaccagctgggattttaaaatgagatcctacagaacgatccatgattaaatcttgaagtac |
38061999 |
T |
|
| Q |
238 |
aaccaagctactttggattgctattggagttgctaagaatatacttgaagaccacaatggtaggattccaattannnnnnngaaatcatccacttgttga |
337 |
Q |
| |
|
|| ||| | | | | || |||||||| ||| | ||||| |||||||| ||| | ||||| |||||||||| |||||| |||||||||||| |
|
|
| T |
38062000 |
aatgaagaaattctcggttactattggaattgaaaggaatagacttgaagtccatagtggtaatattccaattatttttttgaaatcttccacttgttga |
38062099 |
T |
|
| Q |
338 |
actgtgcatagtctccatgatgattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgca |
429 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
38062100 |
actgtgcatagtctccatgatgaattcttaactgagccatctgagtttaggtctgcatcagttattaaagctgcacgattgaagaacctgca |
38062191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 350 - 457
Target Start/End: Original strand, 38180844 - 38180951
Alignment:
| Q |
350 |
ctccatgatgattttttaactgagccatctgattttaggtctgcatcagttattagagatgcccgattgaagaacctgcatttgcatatagatcagcaca |
449 |
Q |
| |
|
||||||||||| || |||||| |||||||||| ||||||||||||||| ||||||||| ||| |||||||| ||| | |||||||||||| ||||| ||| |
|
|
| T |
38180844 |
ctccatgatgacttcttaacttagccatctgagtttaggtctgcatcaattattagagttgcacgattgaataactttcatttgcatatatatcagtaca |
38180943 |
T |
|
| Q |
450 |
ttgttaat |
457 |
Q |
| |
|
|||||||| |
|
|
| T |
38180944 |
ttgttaat |
38180951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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