View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3484_high_4 (Length: 371)
Name: NF3484_high_4
Description: NF3484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3484_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 2622064 - 2621890
Alignment:
| Q |
15 |
agaaaccataacattactccaagtagtggtaaaaaatgttggaaaaattctttgaatttcttttatcctgctggacaaaaagaatatcaacaaaagctct |
114 |
Q |
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| T |
2622064 |
agaaaccataacattactccaagtagtggtaaaaaatgttggaaaaattctttgaatttcttttatcctgctggacaaaaagaatatcaacaaaagctct |
2621965 |
T |
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| Q |
115 |
tttaggactcaaaactttcacttataagctttcaaatgaaacatgatacatgaaaagtaaactcggctacctagctttattc |
196 |
Q |
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| T |
2621964 |
tttaggactcaaaactttcacttataagctttcaa-------atgatacatgaaaagtaaactcggctacctagctttattc |
2621890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 232 - 365
Target Start/End: Complemental strand, 2621854 - 2621721
Alignment:
| Q |
232 |
gctcaaagttggataactcaatacataagtttgctttgcagtaacaaccaaatcgaaaatcaaattctgattcaacaataaatatattacatcactatga |
331 |
Q |
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| T |
2621854 |
gctcaaagttggataactcaatacataagtttgctttgcagtagcaaccaaatcgaaaatcaaattctgattcaataataaatatattacatcactatga |
2621755 |
T |
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| Q |
332 |
agtatcgtcatctaaatagatattcctttgcttc |
365 |
Q |
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| T |
2621754 |
agtatcgtcatctaaatagatattcctttgcttc |
2621721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 2476696 - 2476801
Alignment:
| Q |
51 |
tgttggaaaaattctttgaatttcttttatcctgctggacaaaaagaatatcaacaaaagctcttttaggactc--aaaactttcacttataagctttca |
148 |
Q |
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| T |
2476696 |
tgttagaaaaattgtttgaatttcttttttgctgctgga-aaaaagaatgtcaacagaagttctttcaggagtcatacaactttgatttataagctttca |
2476794 |
T |
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| Q |
149 |
aatgaaa |
155 |
Q |
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| T |
2476795 |
aatgaaa |
2476801 |
T |
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