View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3484_high_5 (Length: 361)
Name: NF3484_high_5
Description: NF3484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3484_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 6 - 343
Target Start/End: Complemental strand, 29069075 - 29068738
Alignment:
| Q |
6 |
aggagcacagaaactcgtagcagtaacaacaacagaactacccgaaacacaccaccgcttatcaaacggaacatcctcttccagacatcgtagctcaaag |
105 |
Q |
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| T |
29069075 |
aggagcacaaaaactcgtagcagtaacaacaacagaactacccgaaacacaccaccgcttatcaaacggaacatcctcttccagacatcgtagctcaaag |
29068976 |
T |
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| Q |
106 |
cacccgccacagatctgaccacgcacaaagagagtctcactgagagcagcagcaccggtgatgccataaccgtctctgtgagtgtcaccatagccgcacg |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29068975 |
cacccgccacagatctgaccacgcacaaagagagtctcactgagagcagcagcaccggtgatgccataaccgtctctgtgagtgtcaccgtagccgcacg |
29068876 |
T |
|
| Q |
206 |
ccccgtctactccgtctctggtgtcatcagagacggagtagtaagtggcgtgggcggacagccattcggagtaagtggaagagggagatgtagggggaga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29068875 |
ccccgtctactccgtctctggtgtcatcagagacggagtagtaagtggcgtgggcggacagccattcggagtaagtggaagagggagatgtagggggaga |
29068776 |
T |
|
| Q |
306 |
ttcattgaatggtgtggctggtggtgatggagaagagt |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29068775 |
ttcattgaatggtgtggctggtggtgatggagaagagt |
29068738 |
T |
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