View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3484_low_10 (Length: 292)
Name: NF3484_low_10
Description: NF3484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3484_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 27 - 231
Target Start/End: Complemental strand, 40952696 - 40952492
Alignment:
| Q |
27 |
ttgtgtaggcctacttaacttaatactaatacatgatgaccacaaattatcaacaattttaattcaataataagtgtataattttcttataaggaagagt |
126 |
Q |
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| T |
40952696 |
ttgtgtaggcctacttaacttaatactaatacatgatgaccacaaattatcaacaattttaattcaataataagtgtataattttcttataaggaagagt |
40952597 |
T |
|
| Q |
127 |
ggaaattgagatttgacgttttcctaattggcttattaatgtggcagctagtgataaaaggagtggaagtaagtggttccttactgaaatatcaaccatt |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40952596 |
ggaaattgagatttgacgttttcctaattggcttattaatgtggcagctagtgataaaaggagtggaagtaagtggttccttactcaaatatcaaccatt |
40952497 |
T |
|
| Q |
227 |
cacaa |
231 |
Q |
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||||| |
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| T |
40952496 |
cacaa |
40952492 |
T |
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