View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3484_low_15 (Length: 239)
Name: NF3484_low_15
Description: NF3484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3484_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 2090141 - 2090366
Alignment:
| Q |
14 |
aggccagtcatagaggagaaaatgttaatatggccatgatcttggaaatgtacaatcttaaagaaccaagattctggagggtcatatgccagagcagcat |
113 |
Q |
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| T |
2090141 |
aggccggtcatagaggagaaaatattaatatggccatgatcctgaaaatgtacaatcttgaagaaccaagattctgaagggtcatataccagagcagcat |
2090240 |
T |
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| Q |
114 |
atgaatttcctccaaaaaattgtccagaaggcttcaaaatagccacacattgttttcttataggattcatgacatagtagtggtagacaccacgcacaat |
213 |
Q |
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| T |
2090241 |
atgaatttcctccaaaaaattgtccagaaggcttcaaaatagccacacattgttttcttataggattcatgacatagtagtggtagacaccacgcacaat |
2090340 |
T |
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| Q |
214 |
attcctagcttgaccatccttatggc |
239 |
Q |
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| T |
2090341 |
attcctagcttgaccatccttatggc |
2090366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 209
Target Start/End: Complemental strand, 2879145 - 2879001
Alignment:
| Q |
65 |
acaatcttaaagaaccaagattctggagggtcatatgccagagcagcatatgaatttcctccaaaaaattgtccagaaggcttcaaaatagccacacatt |
164 |
Q |
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| T |
2879145 |
acaatcttgaaaaaccaagattctgcagggtcatatgccagagcagcatatgaatacccaccagaggtttgtcctatgggcttcataacagtcacacatt |
2879046 |
T |
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| Q |
165 |
gttttcttataggattcatgacatagtagtggtagacaccacgca |
209 |
Q |
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| T |
2879045 |
gttttgtgactggattcaggacatagtaataatagacaccacgca |
2879001 |
T |
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